Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0757 ATGTCCCAATCAAAGACAATGGCAATTCTGGTAATCTTAATCAGCAGTGCCATCTCCTTTGCATTCGCTTCTGATCCTGACACACTTCAAGACTTTTGTGTTGCTCTTCCCTCTTCTTCAGAAACAGGTGTGAAGGTGAATGGATTTGCGTGCAAAGAATTATCAAACGTGACAGAATCTGATTTCTTCTTCAACGGATTAGCCAATGCTGCAACAATCAACAACACAGTAGGGTCGGTGGTGACAGCAGCCAATGTGGAAAAGATTCCAGGGCTCAACACATTGGGTGTCTCTCTCTCAAGAATAGACTACAAACCCGGTGGCCTAAACCCGCCGCACACGCACCCACGCGCCACCGAGGTCGTGTTTGTGTTGGAAGGGGAATTGGAAGTTGGTTTTGTCACCACATCCAACAAGCTCATATCAAAAACCATAAAGGAAGGTGAAGTGTTTGTGTTCCCAAAAGGGTTGATACACTTTCAGAAGAACAACAATGCGGACAAGCCTGCTGCCGTTGTCTCTGCCTTCAACAGCCAACTCCCCGGCACGTTGTCCATCGCCGCCGCTTTGTTCAGCGCAACGCCGGCTGTTCCTGATGATGTTCTCGCTCTAGCATTCAAGATTGATGCCCAAGACGTTAGTAACATCAAGACCAATATTTCCTCCAAGAAACTTGATAAATTACCACGGTCAAAATATAATACTCTTATCATATGGCGTACATACAACTACATTGATCTTAATAAAAAAGATTTTGGTTATAATTTTTCTTGCGATGATCCGGGACGAGGTGGTACTTGTGATATTTCGGCTTGGGACGCATTTTATTTGGCAGGTAATATCTCACAGTTTAATGAATCTTCTACCTATTTGATGGGATGGTTAAGAGATTATCTATGGTTAAACTCTTCACAACTTATCAATGGATATAACCCCTTTGATATGAATAGTTTATCCGTCTGGGCATGGATGTTCTTATTTGGACATCTTGTTTGGACTACTGGATTTATGTTCTTAATCTCCTGGCGCGGATATTGGCAGGAATTGATTGAAACTTTAGCATGGGCTCATGAACGCACACCTTTGGCTAATTTGATTCGCTGGAGAGATAAACCAGTGGCGCTTTCCATTGTGCAAGCGAGATTGGTTGGATTAGCCCACTTTTCTGTAGGTTATATATTTACTTATGCAGCGTTCTTGATTGCCTCTACATCGAACAAATTTGGTTAA 1230 0.4285 MSQSKTMAILVILISSAISFAFASDPDTLQDFCVALPSSSETGVKVNGFACKELSNVTESDFFFNGLANAATINNTVGSVVTAANVEKIPGLNTLGVSLSRIDYKPGGLNPPHTHPRATEVVFVLEGELEVGFVTTSNKLISKTIKEGEVFVFPKGLIHFQKNNNADKPAAVVSAFNSQLPGTLSIAAALFSATPAVPDDVLALAFKIDAQDVSNIKTNISSKKLDKLPRSKYNTLIIWRTYNYIDLNKKDFGYNFSCDDPGRGGTCDISAWDAFYLAGNISQFNESSTYLMGWLRDYLWLNSSQLINGYNPFDMNSLSVWAWMFLFGHLVWTTGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSNKFG* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0757 409 ProSitePatterns Germin family signature. 108 121 IPR019780 GO:0030145
Amo16g0757 409 Gene3D Jelly Rolls 24 223 IPR014710 -
Amo16g0757 409 SMART Cupin_1_3 62 214 IPR006045 -
Amo16g0757 409 Gene3D Photosystem I PsaA/PsaB 243 279 IPR036408 -
Amo16g0757 409 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 2 MEMBER 4 9 221 - -
Amo16g0757 409 Pfam Photosystem I psaA/psaB protein 248 278 IPR001280 GO:0009579|GO:0015979|GO:0016021
Amo16g0757 409 Pfam Photosystem I psaA/psaB protein 282 402 IPR001280 GO:0009579|GO:0015979|GO:0016021
Amo16g0757 409 CDD cupin_OxOx 25 220 - -
Amo16g0757 409 SUPERFAMILY Photosystem I subunits PsaA/PsaB 248 406 IPR036408 -
Amo16g0757 409 PRINTS Germin signature 113 133 IPR001929 GO:0030145
Amo16g0757 409 PRINTS Germin signature 177 192 IPR001929 GO:0030145
Amo16g0757 409 PRINTS Germin signature 143 163 IPR001929 GO:0030145
Amo16g0757 409 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 9 221 - -
Amo16g0757 409 SUPERFAMILY RmlC-like cupins 57 221 IPR011051 -
Amo16g0757 409 Gene3D Photosystem I PsaA/PsaB 280 409 IPR036408 -
Amo16g0757 409 Pfam Cupin 67 212 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0757 Amo-Chr16 12071812 12073551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0757 7 224 Miscellaneous Gene Families AT3G05930 55.708 9.97e-76 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0757 K02690 - sspl:121788936 320.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0757 16 12071812 12073551 Amo16g0757 16 12071812 12073551 ECH