Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0590 AGGGCCATATTAATCAAGGAAATAGCAAGGGGTAGGGTCCTGTTTCTCCATCCTGCATTTTTGCAAAGGCACCAAAATCCAAACACAAGAACAGATCTCAGCTCAGCTCAGACGAATTGCTCTCTTTCTCGGCTCTCCAAGATGGGTCTGTCATTCACGAAGCTATTCAGCAGGCTGTTCGCCAAGAAGGAGATGCGTATACTTATGGTCGGTCTCGACGCTGCCGGTAAGACCACCATTCTCTACAAGCTCAAGCTCGGAGAGATCGTTACCACCATTCCTACCATTGGGTTTAATGTGGAAACCGTCGAATATAAGAACATTAGCTTCACTGTCTGGGATGTTGGTGGCCAGGACAAGATCCGTCCTTTGTGGAGACATTACTTCCAAAATACACAAGGACTTATTTTTGTGGTAGATAGCAATGATCGTGATCGTGTTGTCGAGGCTAGGGATGAGCTCCATAGGATGTTGAATGAGGATGAGTTAAGAGATGCTGTGCTTCTAGTTTTTGCAAACAAACAAGATCTTCCAAATGCTATGAATGCTGCTGAAATAACTGATAAGCTTGGTCTTCATTCACTCCGTCAACGTCACTGGTATATCCAGAGCACCTGCGCTACATCTGGTGAAGGACTTTATGAAGGGCTTGATTGGCTCTCAAACAACATTGCAAACAAGGCTTAG 687 0.4512 RAILIKEIARGRVLFLHPAFLQRHQNPNTRTDLSSAQTNCSLSRLSKMGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0590 228 Gene3D - 51 228 IPR027417 -
Amo16g0590 228 SMART rab_sub_5 65 227 - -
Amo16g0590 228 SMART arf_sub_2 48 228 - -
Amo16g0590 228 PANTHER ADP RIBOSYLATION FACTOR-RELATED 48 228 IPR024156 GO:0005525
Amo16g0590 228 SMART sar_sub_1 48 224 IPR006689 GO:0003924|GO:0005525
Amo16g0590 228 PANTHER ADP-RIBOSYLATION FACTOR A1F 48 228 - -
Amo16g0590 228 CDD Arf1_5_like 65 223 IPR045872 GO:0003924
Amo16g0590 228 TIGRFAM small_GTP: small GTP-binding protein domain 63 203 IPR005225 GO:0005525
Amo16g0590 228 Pfam ADP-ribosylation factor family 52 224 IPR006689 GO:0003924|GO:0005525
Amo16g0590 228 PRINTS GTP-binding SAR1 protein signature 66 89 IPR006689 GO:0003924|GO:0005525
Amo16g0590 228 PRINTS GTP-binding SAR1 protein signature 166 187 IPR006689 GO:0003924|GO:0005525
Amo16g0590 228 PRINTS GTP-binding SAR1 protein signature 94 118 IPR006689 GO:0003924|GO:0005525
Amo16g0590 228 PRINTS GTP-binding SAR1 protein signature 121 146 IPR006689 GO:0003924|GO:0005525
Amo16g0590 228 ProSiteProfiles small GTPase Arf family profile. 58 224 - -
Amo16g0590 228 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 226 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0590 Amo-Chr16 9471268 9473646 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0590 K07937 - twl:119982669 368.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0590 16 9471268 9473646 Amo16g0590 16 9471268 9473646 ECH
Amo16g0590 16 9471268 9473646 Amo19g1188 19 23437995 23440875 ECH