Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0580 ATGGATGCGAAGGATATACTGGGATTGCCCAAGAACTCATTCCCAGCTTTGGAGAAGAAATCTCGTCCTCACAAAGAATCTCACAGAAAACCCGATGGAATTTCCCGCGAGGTTTATGCTCTCACTGGTGGAGTGCCACCTCTTATGCCTTCACTTGATTCTTCTCAATTGAAGAAAAAACCTCCCTCTCACGAAAAGATCACTTGGCAATGGCTTCCTTTCACGAACTCAGCCCGTAAAGACAATCTTCAACTTTATCATTGGGTTCGAGTGGTCAACGGTGTTCCACCTACAGGGGACTATTCTTTTGCCAAGTATAACAAGTCTGTTGATGTTGTTAAATACACGGACGAAGAGTATGACAAGTATTTGACAGATCCTATGTGGACCAAGGAGGAGACAAATCAACTGTTTGACTTATGTCAGAGGTTTGATCTGCGATTTATTATAATAGCTGATAGGTTCCCATCTTCTCGTACTGTAGAGGAATTAAAGGATCGATATTATAGCGTATCCCGGGCTATATTGATTGCTAGAGCTTCATCTACTGGGGATGTTGCAACACATCCACTTGTTAAGGAACCATATAATGTTTCACAAGAGATCGAACGAAAACGAGCACTATCCATGGTCCTCTCTCAAACAAGGCAACAAGAGCGAAGAGATGAGGAGGTTCTTGTTGAAGCAAAACGGATAGCTGAGTTACGTATGCCTGCTAAGGCTGTCGAAGAATCCCAGTTGGCTCCTTCAAATGCTGGTGCAGAAGTTACAGGGAGGGCTGTCCCTGGTGAAACTGCGACTCCATCAAATGCACAACTTCCATCAATCACGTTTCCTGATAATGCATCTACTCTAGCTTCTCTTCGCATACTTCGTGTATATTTGAGGACGTATGCACTTGACCAAATGGTGCAAGCTACAAGCTCATCTGCTGGGCCGCGGACTGTCAAACGGATTGAACAAACTTTGCTAGATCTTGGGGTCAATTTGAAACCAAGGGTTCCAACTAAAGCTGTATGTGCTGAGCATCTTGAACTAAGAAAAGAAATGTTAACTTTGCTGAATCTTCAGAAACAGGTGCAATACAAAGAGGCTGAAGGTTCGCCTTTTCGTGATGGGTCATACAATGAAGCACCAGGCACACCAAAGGACTGGACGTTTATTCCAGACACAATGAATTTCGGAGGTGAAAGGGTTAGCAAAAAGGACCAAAAGCGCAAGGGACATGGACATCCATCGTCATCAGCTCATAAAAGACCTAGAAAAAAGGCCTCGGAGTTTTAG 1284 0.4393 MDAKDILGLPKNSFPALEKKSRPHKESHRKPDGISREVYALTGGVPPLMPSLDSSQLKKKPPSHEKITWQWLPFTNSARKDNLQLYHWVRVVNGVPPTGDYSFAKYNKSVDVVKYTDEEYDKYLTDPMWTKEETNQLFDLCQRFDLRFIIIADRFPSSRTVEELKDRYYSVSRAILIARASSTGDVATHPLVKEPYNVSQEIERKRALSMVLSQTRQQERRDEEVLVEAKRIAELRMPAKAVEESQLAPSNAGAEVTGRAVPGETATPSNAQLPSITFPDNASTLASLRILRVYLRTYALDQMVQATSSSAGPRTVKRIEQTLLDLGVNLKPRVPTKAVCAEHLELRKEMLTLLNLQKQVQYKEAEGSPFRDGSYNEAPGTPKDWTFIPDTMNFGGERVSKKDQKRKGHGHPSSSAHKRPRKKASEF* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0580 427 Pfam DNA methyltransferase 1-associated protein 1 (DMAP1) 273 366 IPR008468 GO:0005634|GO:0045892
Amo16g0580 427 MobiDBLite consensus disorder prediction 1 35 - -
Amo16g0580 427 MobiDBLite consensus disorder prediction 17 35 - -
Amo16g0580 427 PANTHER BNAA04G26950D PROTEIN 2 425 - -
Amo16g0580 427 Gene3D - 98 185 - -
Amo16g0580 427 MobiDBLite consensus disorder prediction 365 427 - -
Amo16g0580 427 PANTHER DNA METHYLTRANSFERASE 1-ASSOCIATED PROTEIN 1 FAMILY MEMBER 2 425 IPR027109 GO:0006281|GO:0006338|GO:0035267|GO:0043967|GO:0043968
Amo16g0580 427 CDD SANT_DMAP1_like 129 171 - -
Amo16g0580 427 SMART sant 125 174 IPR001005 -
Amo16g0580 427 Pfam SANT/Myb-like domain of DAMP1 101 175 IPR032563 -
Amo16g0580 427 MobiDBLite consensus disorder prediction 404 418 - -
Amo16g0580 427 SUPERFAMILY Homeodomain-like 125 174 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0580 Amo-Chr16 9308389 9313127 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0580 K11324 - gmx:100818926 699.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0580 16 9308389 9313127 Amo16g0580 16 9308389 9313127 ECH