Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0577 ATGGGTACAGAGAGAAACAGGATAGCGTGCTTGTTCGACGTGGTTGACGACGGCACCGCTAAGATGTCGGAATCCGGCGGTGGAGCCACCAACAACAACCACCTCATCAATCGGTGGACCGGGAGGCCTTTTTCGCAGAGGTACTTTGAGATTCTGGAGAAGAGGAAGAGTCTTCCCGTTTGGCACCAGAAACACCAGTTCTTGCGAACTCTCGCCCATAACCAGATTCTCATTCTCGTCGGTGAAACTGGCAGTGGCAAAACCACGCAGATTCCTCAATTTGTTTTGAATGCTGTTGATTTAGAAACACCAGATAAATGCAGGAAGATGATGATTGCGTGCACTCAGCCTCGGAGAGTGGCTGCAATGTCTGTTTCCCGGCGTGTGGCTGAAGAGATGGATGTAACGATTGGAGAAGAGGTTGGTTATAGTATCAGATTTGAAGACTGCAGCAGTTCAAGGACAGTTTTGAAGTATCTCACAGATGGTATGCTTTTAAGAGAAGCAATGACAGATCCACTCTTGGAACAATATAAAGTAATTATTCTCGATGAGGCACATGAAAGGACTTTGGCTACAGATGTGCTATTTGGCCTTATGAAGGAAGTTCTTAAAAATAGACATGACTTAAAGTTAGTCGTAATGAGTGCGACTCTAGAAGCTGAAAAGTTCCAGGGCTACTTTAGTGGTGCCCCTCTTATGAATGTTCCAGGAAGGCTGCATCCTGTTGAAATTTTTTATACTCAGGAACCTGAAAGAGATTACCTGGAGGCTGCTATTAGGACGGTGATGCAGATACACATGGGCGAACCTTCTGGGGATATACTTGTTTTTCTAACGGGAGAGGAAGAGATAGAAGATGCATGCCGCAAAATATCTAAAGAAATTTCAAATTTGGGAGATCAGGTGGGCCCTGTGAAAGTGGTATCCCTCTATTCCACTCTTCCCCCAGCTATGCAGCAGAAAATTTTTGAACCACCTCCACCTCCACTAAAGGAGGGTGGGCCTCCTGGAAGGAAAATTATTGTGTCAACAAACATAGCTGAAACCTCCTTAACAATTGATGGCATTGTCTATGTTATTGACCCTGGTTTCTCTAAGCAGAAGGTTTATAACCCACGAGTTCGTGTTGAGTCTTTATTAGTGTCACCAATATCAAAAGCAAGTGCGCATCAGAGATCAGGACGTGCTGGAAGAACTCAACCAGGGAAATGTTTTAGACTTTATACTGAGAAAAGTTTCAATAACGATCTACAGCCTCAGACCTATCCCGAAATTTTGAGATCAAATCTTGCCAACTCTGTTCTTACCTTGAAGAAACTGGGTATAGATGATTTAGTGCATTTTGATTTCATGGACCCTCCTGCCCCTGAGACCTTGATGCGTGCATTGGAAGTGTTGAATTACTTGGGAGCACTGGACGATGATGGTACCTTAACAAAGTTGGGAGAGATTATGAGTGAATTTCCCTTGGATCCACAGATGTCAAAGATGCTTATTGTGAGTCCCGAATTCAACTGTTCAAATGAGATTCTGTCAATGTGTGCCATGCTTTCAGCCCCCAATTGCTTTGTCCGGCCTAGGGAAGCACAAAAAGCTGCTGATGAAGCTAAAGCTAGGTTTGGGCACATTGATGGGGATCATCTCACACTCTTGAATGTCTACCATGCATACAAGCAAAATAATGAGGATCCCTCTTGGTGCTACGATAACTTTGTTAATCAAAGGGCACTGAAATCAGCTGATAATGTTAGACAACAGTTAGTGCGTATCATGGCCCGGTTTAGCCTCAAGTTATGCAGCACCGACTTCAATAGTCGTGACTACTACATCAACATAAGGAAAGCTATGTTAGCTGGATATTTCATGCAGGTAGCTCATCTGGAGCGAACAGGACATTACTTGACAGTGAAAGACAATCAGGTGGTGCATTTGCATCCATCAACTTGTCTTGACCACAAACCTGAATGGGTTATCTATAATGAATATGTTCTTACTAGTCGAAATTTTATTCGCACTGTGACGGACATTCGTGGGGGGTGGTTGGTTGATATAGCACCACACTACTATGATTTGTCAAATTTTCCTCATTGTGAGGCCAAGGGTGTTCTTGAGAGACTCTACAAGAAGAAAAAGAAGGGAAAGGAGGAAGCCAGGAAGCACAAATGA 2169 0.4375 MGTERNRIACLFDVVDDGTAKMSESGGGATNNNHLINRWTGRPFSQRYFEILEKRKSLPVWHQKHQFLRTLAHNQILILVGETGSGKTTQIPQFVLNAVDLETPDKCRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSSRTVLKYLTDGMLLREAMTDPLLEQYKVIILDEAHERTLATDVLFGLMKEVLKNRHDLKLVVMSATLEAEKFQGYFSGAPLMNVPGRLHPVEIFYTQEPERDYLEAAIRTVMQIHMGEPSGDILVFLTGEEEIEDACRKISKEISNLGDQVGPVKVVSLYSTLPPAMQQKIFEPPPPPLKEGGPPGRKIIVSTNIAETSLTIDGIVYVIDPGFSKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANSVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGTLTKLGEIMSEFPLDPQMSKMLIVSPEFNCSNEILSMCAMLSAPNCFVRPREAQKAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYDNFVNQRALKSADNVRQQLVRIMARFSLKLCSTDFNSRDYYINIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSTCLDHKPEWVIYNEYVLTSRNFIRTVTDIRGGWLVDIAPHYYDLSNFPHCEAKGVLERLYKKKKKGKEEARKHK* 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0577 722 CDD DEXHc_DHX15 46 236 IPR044756 GO:0003724|GO:0005524
Amo16g0577 722 PANTHER ATP-DEPENDENT RNA HELICASE 1 722 - -
Amo16g0577 722 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 613 689 IPR011709 -
Amo16g0577 722 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 54 608 IPR027417 -
Amo16g0577 722 PANTHER PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HELICASE DEAH3-RELATED 1 722 - -
Amo16g0577 722 SMART ha2_5 462 552 IPR007502 GO:0004386
Amo16g0577 722 Coils Coil 704 722 - -
Amo16g0577 722 SMART helicmild6 283 401 IPR001650 -
Amo16g0577 722 Pfam Helicase conserved C-terminal domain 265 400 IPR001650 -
Amo16g0577 722 CDD SF2_C_RHA 241 409 - -
Amo16g0577 722 Gene3D - 446 555 - -
Amo16g0577 722 SMART ultradead3 55 246 IPR014001 -
Amo16g0577 722 Pfam AAA domain 73 217 IPR003593 -
Amo16g0577 722 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 259 442 IPR001650 -
Amo16g0577 722 Pfam Helicase associated domain (HA2) 463 551 IPR007502 GO:0004386
Amo16g0577 722 Gene3D - 12 239 IPR027417 -
Amo16g0577 722 Gene3D - 240 422 IPR027417 -
Amo16g0577 722 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 68 237 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0577 Amo-Chr16 9284896 9288868 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0577 K12820 - gmx:100819776 1285.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0577 16 9284896 9288868 Amo16g0577 16 9284896 9288868 ECH