Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0533 ATGGCGCATCGAAGAACGAAGCTCCTTTTCATTCTTCTATGCGCTCTCTGCTATTCTCTCAATGCTATCGCCGGAAAGAGCTACTACGATATACTTCAAGTTTCCAAGGGTGCTTCGGAGGAGCAGATAAAGAGGGCGTATAGGAAGCTTGCATTGAAGTACCACCCTGATAAGAACCAGGGCAATGAAGAAGCTAATAAGAAGTTTGCTGAAATTAGCAATGCATATGAAGTGTTGTCGGATAGTGAGAAGAGAAACATTTATGACAGATATGGTGAGGAGGGTTTGAAGCAGCATGCTGCCAATGGTGGCAGAGGTGGTGGAATGGGAATGAACATCCAAGACATTTTTAGCTCTTTCTTTGGTGGTGGTTCGATGGAGGAGGAAGAGAAGATTGTTAAAGGTGATGATGTGATTGTTGAATTGGATGCAAGCCTTGAAGATTTATACATGGGAGGTTCCTTGAAGGTTTGGAGAGAGAAAAATGTGTTAAAGCCAGCACCAGGAAAAAGGCGCTGCAACTGTAGAAATGAGGTTTATCACAAGCAAATTGGGCCTGGGATGTTTCAGCAGATGACGGAGCAGGTCTGTGAGCAGTGTCCTAATGTCAAATATGTAAGGGAGGGCTATTTTATCACCGTTGATATAGAGAAAGGCATGCAAGATGGGCAGGAGGTACTATTCTATGAGGATGGTGAGCCTATCATAGACGGAGAATCTGGAGATTTAAGGTTCCGTATCCGAACTGCACCCCATGATGTCTTCAGAAGGGAAGGCAATGATTTGCACACCACTGTCACTATAACCCTGGTTCAAGCCCTTGTTGGATTTGAGAAGACCATCAAACATCTAGATGAGCATCTGGTGGACATAAGCACAAAGGCAATTACAAAGCCAAAGCAAGTGAAGAAGTTCAAAGGGGAGGGTATGCCATTGCATATGAGCACGAAGAAAGGAGATCTTTACGTCACTTTTGAGGTTCTATTCCCCACATCACTAACGGAGGAACAAAAAAAACAGATACAAGCAATTCTTGGTTAG 1041 0.438 MAHRRTKLLFILLCALCYSLNAIAGKSYYDILQVSKGASEEQIKRAYRKLALKYHPDKNQGNEEANKKFAEISNAYEVLSDSEKRNIYDRYGEEGLKQHAANGGRGGGMGMNIQDIFSSFFGGGSMEEEEKIVKGDDVIVELDASLEDLYMGGSLKVWREKNVLKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCEQCPNVKYVREGYFITVDIEKGMQDGQEVLFYEDGEPIIDGESGDLRFRIRTAPHDVFRREGNDLHTTVTITLVQALVGFEKTIKHLDEHLVDISTKAITKPKQVKKFKGEGMPLHMSTKKGDLYVTFEVLFPTSLTEEQKKQIQAILG* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0533 346 CDD DnaJ 28 81 IPR001623 -
Amo16g0533 346 SUPERFAMILY HSP40/DnaJ peptide-binding domain 133 256 IPR008971 GO:0006457|GO:0051082
Amo16g0533 346 PANTHER BNAA09G39960D PROTEIN 9 345 - -
Amo16g0533 346 PRINTS DnaJ domain signature 29 47 IPR001623 -
Amo16g0533 346 PRINTS DnaJ domain signature 47 62 IPR001623 -
Amo16g0533 346 PRINTS DnaJ domain signature 64 84 IPR001623 -
Amo16g0533 346 PRINTS DnaJ domain signature 84 103 IPR001623 -
Amo16g0533 346 CDD DnaJ_C 136 333 - -
Amo16g0533 346 ProSiteProfiles dnaJ domain profile. 27 92 IPR001623 -
Amo16g0533 346 Pfam DnaJ C terminal domain 140 330 IPR002939 -
Amo16g0533 346 ProSitePatterns Nt-dnaJ domain signature. 69 88 IPR018253 -
Amo16g0533 346 SUPERFAMILY HSP40/DnaJ peptide-binding domain 254 340 IPR008971 GO:0006457|GO:0051082
Amo16g0533 346 SUPERFAMILY Chaperone J-domain 24 125 IPR036869 -
Amo16g0533 346 Gene3D - 251 345 - -
Amo16g0533 346 Gene3D DnaJ domain 24 130 IPR036869 -
Amo16g0533 346 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 9 345 IPR044713 GO:0006457|GO:0030544
Amo16g0533 346 Gene3D - 131 250 - -
Amo16g0533 346 SMART dnaj_3 26 84 IPR001623 -
Amo16g0533 346 Pfam DnaJ domain 28 89 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0533 Amo-Chr16 8729877 8733544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0533 43 89 Miscellaneous Gene Families AT5G49580 57.447 1.37e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0533 K09517 - gmx:100799701 624.78