Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0447 ATGCAGTTCTACTTATCTCTGATAGATTTGGAGTCGAGTTTGTGTGGATTGGTTCTGATTTCTCTCCGTTTCGCGAAATTGAAGTTCCCGGCTATTTTTCTTTTCGGGTCTCAAGGTTTTGGGTTCGGGTTTTTCCCGTTTGAAGATCGGTTCTCGAAGATTGAAATTATTGGTAGGGTTTCAGATTTAGGAGCTGCTATGACTTCTCTGAGCAGAGAATTGGTGTTTCTCATACTCCAATTTCTGGAGGAGGAAAAATTCAAAGAGTCGGTGCACAAGCTTGAGAAAGAGTCGGGGTTTTTCTTCAACATGAAATACTTTGAGGAAAAAGTACAGGCTGGCGAATGGGAAGAAGTTGAGAAGTATTTGGCAGGGTTTACAAAAGTTGATGATAATAGATACTCCATGAAAATATTCTTTGAAATCAGGAAGCAGAAATATCTTGAAGCCCTTGATAGGCAAGACAAGGCAAAGGCTGTTGAGATATTAGTGGGTGATTTAAAAGTGTTCTCCACCTTCAATGAGGAACTATACAAAGAAATTACGCAGCTGTTAACGCTTAATAATTTCAGTCTGAATTGGCAGCACCAGCTTTGCAAAAACCCCAGGCCAAACCCAGATATAAAGACACTATTCACTGATCACACATGTACTCCTCCTAATGGTCCTCTAGCACCTGCACCTGTCAATCTTCCAGTTGCTGCTGTTGCAAAGCCTGCTGCCTATACTTCACTTGGAGCACATGGTCCATTTCCGCCTGCTGCCGCAACTGCTAATGCAAATGCTTTGGCTGGTTGGATGGCTAATGCGTCAGCTTCATCATCTGTCCAAGCAGCTGTTGTGACGGCATCAAGCATGCCACTCCCACAGAATCAAGTGTCTATCTTGAAGAGGCCGAGGACACCTCCAACAGCTCCTGGCATGGTTGATTATCAGAATGCTGCCGATCATGACCAGCTAATGAAAAGACTTCGGCCTGCTCCTTCTCTAGAGGAGGTTTCCTATCCGACAGCCCGACAAGCTTCTTGGTCACCGGAAGATCTACCAAGAACAGTGGCTATGACTTTACATCAAGGCTCCTCTGTGACAAGCATGGACTTTCATCCTTCTCACCAAACCTTACTTCTTGTTGGATCTAACAATGGTGAAATTGCCCTCTGGGAACTTACTTTGCGAGATAGATTGGTTACAAAGCCATTCAAGATATGGGATATCTCAGCATGTTCATTACCATTTCAGGCTGCTGCGGTCAAAGATGCCCCTATTTCTGTCAGCCGTGTTACATGGAGCCCCGATGGAAGTTTTGTGGGTGTCGCATTTACTAAACATTTGATTCACTTGTATGCCTACACTGGTTCAAATGAGCTAACTCAGCGCATAGAGGTTGATGCCCACATTGGTGGTGTGAACGACTTGGCATTTGCTCATCCAAATAAGCAACTTTGCATTGTGACTTGTGGGGATGATAAGTTGATAAAGGTGTGGGATTTAACTGGGCGAAGACTATTTAACTTTGAGGGGCATGATGCACCTGTATATTCCATTTGTCCTCACCACAAGGAGAACATACAGTTCATATTTTCAACTGCCATCGATGGCAAAATAAAAGCCTGGCTATATGATAACATGGGTTCCAGGGTTGACTATGATGCCCCTGGTCACTGGTGTACTACAATGCTTTATAGTGCTGATGGGAGTAGACTGTTTTCTTGTGGGACAAGTAAAGATGGAGAGTCATACCTTGTTGAGTGGAATGAAAGCGAAGGAGCCATCAAGAGAACATACAATGGTTTCAGAAAGAAATCTGCTGGTGTTGTGCAGTTTGACACAACTCAAAATCGATTCTTAGCTGCTGGAGAAGAAGGTCAAATCAAGTTTTGGGACATGGACAATATTAATGTTCTTGCTAGCATTGATGCTGACGGTGGACTTCAGGGCCTTCCACGCCTGAGATTCAACAAGGAAGGAAATCTTCTTGCTGTTACTACTGCGGACAACGGATTCAAAATTCTTGCCAATGCTAGTGGTCTTAGATCTTTAAGAACGATTGAAACTCCAGCTTTTGAAGCATTGAGATCACCCATTGAATCTGCTGCAATCAAGGCATCTGGCTCTGCTGCTGTTAACGTTAGTCCTGTCAACTGTAAAGTGGAAAGGAGCTCCCCTGTCAGGCCTTCTCCAATTCTTAATGGAGTTGATCCCGCAGGTCGAAATGTTGAGAAACCAAGAATTGTGGAAGATGCAATTGATAGAACTAAACCATGGCAGCTGTCTGAAATTCTGGATCCAGTCCAGTGTCGGTTAGTAACCATGCCTGACAGCACAGATTCTTCTAGCAAGGTTGTTCGACTTCTATATACAAACTCTGGTGCTGGTCTCTTGGCACTTGGTTCAAATGGTGTTCAGAAGCTGTGGAAATGGACACGCGGTGAACAGAATCCCACTGGGAAGGCAACTGCCAGTGTTGTTCCACAACATTGGCAACCCAACAGTGGTCTTCTTATGACCAACGATATCTCAGGTGTCAATCTTGAAGAAGCAGTTCCTTGCATTGCACTCTCAAAGAATGATTCATATGTTATGTCTGCCTGTGGTGGGAAGGTTTCATTATTCAACATGATGACGTTCAAGGTAATGACAACATTCATGCCACCACCTCCTGCCTCTACTTTTCTGGCTTTCCATCCTCAGGATAACAACATAATTGCCATCGGAATGGAGGATTCTACCATTCATATTTATAATGTCAGAGTTGATGAGGTGAAATCAAAATTGAAGGGACACCAGAAACGTATTACTGGTTTAGCCTTCTCAACAAATCTCAACATCCTTGTTTCATCAGCTGCTGATGCTCATCTTAGCGTGTGGAGCATTGATACATGGGAGAAAAGAAAATCGGTTCCAATACAGCTACCTGCTGGAAAGGCGCCCACTGGTGACACTAGAGTGCAGTTTCATTCTGACCAACTACGCTTATTGGTAGCCCATGAGACTCAATTGGCAATATATGACGCCTCTAAGATGGAACGCATTCGGCAGTGGGTTCCACAAGATGTTCTTCCTGCTCCTATATCATATGCAGCTTATTCCTGCAACAGTCAGTTAATTTACGCTACATTCTGTGATGGCAATACTGGAGTTTTTGATGCGGATAGCTTGAGACTACGATGTCGTATTGCACTATCAACATATGTGCAATCAGCAACTTTAAGTGGAAGCCAATCTCTGTATCCTGTTGTTGTCGCCGCGCATCCAATAGAGGCGAACCAATTCGCGGTTGGATTGACAGATGGGTCTGTGAAAGTAATAGAGCCCAGTGAATCAGAGGGTAAATGGGGAACTAGTCCACCCATTGATAATGGAATATTGAACGGTAGAGCAGCATCTTCTTCTACAACAAGCAACCACACACCCGAGCAGGCACAACGATAA 3432 0.4403 MQFYLSLIDLESSLCGLVLISLRFAKLKFPAIFLFGSQGFGFGFFPFEDRFSKIEIIGRVSDLGAAMTSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLAGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVEILVGDLKVFSTFNEELYKEITQLLTLNNFSLNWQHQLCKNPRPNPDIKTLFTDHTCTPPNGPLAPAPVNLPVAAVAKPAAYTSLGAHGPFPPAAATANANALAGWMANASASSSVQAAVVTASSMPLPQNQVSILKRPRTPPTAPGMVDYQNAADHDQLMKRLRPAPSLEEVSYPTARQASWSPEDLPRTVAMTLHQGSSVTSMDFHPSHQTLLLVGSNNGEIALWELTLRDRLVTKPFKIWDISACSLPFQAAAVKDAPISVSRVTWSPDGSFVGVAFTKHLIHLYAYTGSNELTQRIEVDAHIGGVNDLAFAHPNKQLCIVTCGDDKLIKVWDLTGRRLFNFEGHDAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDNMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGESYLVEWNESEGAIKRTYNGFRKKSAGVVQFDTTQNRFLAAGEEGQIKFWDMDNINVLASIDADGGLQGLPRLRFNKEGNLLAVTTADNGFKILANASGLRSLRTIETPAFEALRSPIESAAIKASGSAAVNVSPVNCKVERSSPVRPSPILNGVDPAGRNVEKPRIVEDAIDRTKPWQLSEILDPVQCRLVTMPDSTDSSSKVVRLLYTNSGAGLLALGSNGVQKLWKWTRGEQNPTGKATASVVPQHWQPNSGLLMTNDISGVNLEEAVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSAADAHLSVWSIDTWEKRKSVPIQLPAGKAPTGDTRVQFHSDQLRLLVAHETQLAIYDASKMERIRQWVPQDVLPAPISYAAYSCNSQLIYATFCDGNTGVFDADSLRLRCRIALSTYVQSATLSGSQSLYPVVVAAHPIEANQFAVGLTDGSVKVIEPSESEGKWGTSPPIDNGILNGRAASSSTTSNHTPEQAQR* 1144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0447 1143 SUPERFAMILY WD40 repeat-like 779 1103 IPR036322 GO:0005515
Amo16g0447 1143 ProSiteProfiles Trp-Asp (WD) repeats profile. 925 966 IPR001680 GO:0005515
Amo16g0447 1143 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 186 1143 IPR027728 GO:0006355
Amo16g0447 1143 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 67 190 IPR027728 GO:0006355
Amo16g0447 1143 ProSiteProfiles Trp-Asp (WD) repeats profile. 355 397 IPR001680 GO:0005515
Amo16g0447 1143 Gene3D - 334 577 IPR015943 GO:0005515
Amo16g0447 1143 SMART WD40_4 453 496 IPR001680 GO:0005515
Amo16g0447 1143 SMART WD40_4 836 872 IPR001680 GO:0005515
Amo16g0447 1143 SMART WD40_4 498 539 IPR001680 GO:0005515
Amo16g0447 1143 SMART WD40_4 875 915 IPR001680 GO:0005515
Amo16g0447 1143 SMART WD40_4 918 957 IPR001680 GO:0005515
Amo16g0447 1143 SMART WD40_4 1063 1104 IPR001680 GO:0005515
Amo16g0447 1143 SMART WD40_4 411 449 IPR001680 GO:0005515
Amo16g0447 1143 SMART WD40_4 1013 1049 IPR001680 GO:0005515
Amo16g0447 1143 SMART WD40_4 349 388 IPR001680 GO:0005515
Amo16g0447 1143 SMART WD40_4 588 628 IPR001680 GO:0005515
Amo16g0447 1143 SMART WD40_4 542 585 IPR001680 GO:0005515
Amo16g0447 1143 Pfam WD domain, G-beta repeat 462 496 IPR001680 GO:0005515
Amo16g0447 1143 Pfam WD domain, G-beta repeat 924 957 IPR001680 GO:0005515
Amo16g0447 1143 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 925 960 - -
Amo16g0447 1143 PANTHER PROTEIN, PUTATIVE-RELATED 186 1143 - -
Amo16g0447 1143 PANTHER PROTEIN, PUTATIVE-RELATED 67 190 - -
Amo16g0447 1143 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 423 962 IPR011047 -
Amo16g0447 1143 Gene3D - 578 706 IPR015943 GO:0005515
Amo16g0447 1143 SMART Lish 70 102 IPR006594 GO:0005515
Amo16g0447 1143 Gene3D - 773 1112 IPR015943 GO:0005515
Amo16g0447 1143 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 100 158 IPR006595 -
Amo16g0447 1143 MobiDBLite consensus disorder prediction 1106 1143 - -
Amo16g0447 1143 SMART ctlh 100 158 IPR006595 -
Amo16g0447 1143 SUPERFAMILY YVTN repeat-like/Quinoprotein amine dehydrogenase 351 452 IPR011044 -
Amo16g0447 1143 ProSiteProfiles Trp-Asp (WD) repeats profile. 462 497 IPR001680 GO:0005515
Amo16g0447 1143 ProSitePatterns Trp-Asp (WD) repeats signature. 483 497 IPR019775 -
Amo16g0447 1143 MobiDBLite consensus disorder prediction 1124 1143 - -
Amo16g0447 1143 ProSiteProfiles LIS1 homology (LisH) motif profile. 70 102 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0447 Amo-Chr16 7179821 7187699 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0447 - - gmx:100793575 1895.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0447 16 7179821 7187699 Amo16g0447 16 7179821 7187699 ECH