Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0427 ATGATGGCCCTCGTAGCGATAATAATGGGTCTCTTATTGTTTCAGTCGTCTTTTGCGGAAGAAGACGACGCCTTTGTGCTCACACAGGACACCTTCGAAAACGAGGTTGGCCATGATCGCGGCGTTCTCATCAAGTTCTACGCTCCCTGGTGTGGCCACTGTAAAAAGCTTGTACCGGAGTATGAAAAGCTCGCAGCAACTTTCAAGAAAACCAAGTCCGTTTTGATCGCCAAAGTAGATTGTGATGCAGATAAAAGCATTTGCTCTAAATATGGGGTTTCTGTTTACCCTACAATTAAGTGGTTTCCTCAGGGTTCTTTAGAACCTATGTTATATGAAGGTGCAAAAACCGCAGAAGCCCTTGTTGGATTTGTGAACATGAAAGGAGGTACCAATGTAAAGATAGCAACAACTCCATCTGATGTGGTGCCTCTCACCTTATTTAACTTTGATAAGATTGTCTTGGATAAAACAAAACATGTTCTTGTTGAGTTCTATGCACCCTGGTGCAAACATTGCAAGGCCTTTGCCCCTACTTATGAAAAGGTTGCTACAGCATTTAAACCAGAAGAAGATGTAGTTATAGCTAGTATTGATGGTGACATGTACAAGGATGTAACTACAAAATATGAAATTACTAGTTATCCCAAACTGAAATTGTTCAGAAAGAGCAATAAAGCTGGTGAAGTTTATGAAGGTGCTCGTAATTTGGATGATATTGTATCTTACATCAATGAGAAATGTGGCACAAATCGCGATGGACAAGGAAGACTTACTTCTAAAGCTGGTATAGTAGCATCCCTGGATAAGTTGGTGAAGAAATTTGTGAATGCAGGTGACAATGACAAAAAGGCCATCTATTCACAACTTGAAGAGGAAGTTGAGGATCTTGAAGGATCTGATGCAAGATATGGCAAATTGTACTTAAAACTTGCTAAGAACTGTATGGAAAAGGGTAAAGAGTATGCAAAGAACGAGTCAATAAACCCAACCAAGACAGATGAATTCACTCTCAAGAAGAACATCTTATCTTTATTTGCTTAA 1044 0.3966 MMALVAIIMGLLLFQSSFAEEDDAFVLTQDTFENEVGHDRGVLIKFYAPWCGHCKKLVPEYEKLAATFKKTKSVLIAKVDCDADKSICSKYGVSVYPTIKWFPQGSLEPMLYEGAKTAEALVGFVNMKGGTNVKIATTPSDVVPLTLFNFDKIVLDKTKHVLVEFYAPWCKHCKAFAPTYEKVATAFKPEEDVVIASIDGDMYKDVTTKYEITSYPKLKLFRKSNKAGEVYEGARNLDDIVSYINEKCGTNRDGQGRLTSKAGIVASLDKLVKKFVNAGDNDKKAIYSQLEEEVEDLEGSDARYGKLYLKLAKNCMEKGKEYAKNESINPTKTDEFTLKKNILSLFA* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0427 347 PRINTS Thioredoxin family signature 92 103 - -
Amo16g0427 347 PRINTS Thioredoxin family signature 50 59 - -
Amo16g0427 347 PRINTS Thioredoxin family signature 42 50 - -
Amo16g0427 347 Gene3D - 262 347 IPR036356 -
Amo16g0427 347 SUPERFAMILY Thioredoxin-like 139 250 IPR036249 -
Amo16g0427 347 TIGRFAM pdi_dom: protein disulfide-isomerase domain 27 127 IPR005788 GO:0003756
Amo16g0427 347 TIGRFAM pdi_dom: protein disulfide-isomerase domain 148 247 IPR005788 GO:0003756
Amo16g0427 347 SUPERFAMILY ERP29 C domain-like 262 346 IPR036356 -
Amo16g0427 347 Pfam Endoplasmic reticulum protein ERp29, C-terminal domain 263 346 IPR011679 GO:0005783
Amo16g0427 347 SUPERFAMILY Thioredoxin-like 18 126 IPR036249 -
Amo16g0427 347 ProSiteProfiles Thioredoxin domain profile. 16 130 IPR013766 -
Amo16g0427 347 Gene3D Glutaredoxin 134 261 - -
Amo16g0427 347 ProSiteProfiles Thioredoxin domain profile. 132 249 IPR013766 -
Amo16g0427 347 Pfam Thioredoxin 25 125 IPR013766 -
Amo16g0427 347 Pfam Thioredoxin 142 245 IPR013766 -
Amo16g0427 347 Gene3D Glutaredoxin 15 132 - -
Amo16g0427 347 CDD PDI_a_ERp38 26 125 - -
Amo16g0427 347 ProSitePatterns Thioredoxin family active site. 43 61 IPR017937 -
Amo16g0427 347 PANTHER BNAC04G51940D PROTEIN 12 346 - -
Amo16g0427 347 PANTHER PROTEIN DISULFIDE-ISOMERASE C17H9.14C-RELATED 12 346 - -
Amo16g0427 347 CDD ERp29c 265 346 IPR011679 GO:0005783
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0427 Amo-Chr16 6874482 6876679 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0427 K09584 - qsu:112005673 479.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0427 16 6874482 6876679 Amo16g0427 16 6874482 6876679 ECH