Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0412 ATGTCAAGCACTGTGCTCAAGCAATCCAATACAAGAAAGTTTTTAAATTATAAAACCAGTAACCACACTCTCAAGATGCATAGAACGTTGGGCTCTTTGGTAGCTGAAGTTGCAGGGAAGATGAAAGCAATGTGGTTATGTCCAAAGGTTTCGGGTTTTGATCCTTCTGAAAGATGGGGTCACTCTGCTTGCTTCTTCAATGGCCTTATGTATGTCTTTGGGGGATGTTGTGGAGGGATGCATTTCAGTGATGTTCTCACTTTGGACCTTGATAAAATGGTTTGGAGGAAGGTCGCAACCACAGGCGAAAATCCAGGTCCTAGGGACAGCCATAGTGCTGTTATTGTAGGCCATAAGATGATAGTGTTTGGTGGCAGCAATGGATTCAAGAAGGTGAATCATATTCATATTCTTGATCTTGTCACCAAAGTGTGGGTTAGTCCTGAATGCAAAGGGACACCTCCTTCGCCCCGGGAGAGCCACACGGCCGTGCTCGTTGGCGGCTATAGACTAGTGATCTTTGGTGGCAGTGGGGAAGGCAGAGCAAACTATTTGAATGATTTGCACATTCTTGAACTAGGAACCATGAGATGGACTTGCCCTGAGTTGAAAGGTGAATTTCCTGTCCCTAGGGACAGTCATAGTACCATTGCCATTGGGAACAAGCTTATTGTATATGGTGGAGATTCAGGTTATCAGTACCATGGAAACATTGATATTCTTGATATGGAAACAATGACTTGGTCCAAATTGAGAATTCAAGGTTCTTCACCTGGAGTCAGGGCAGGTCATGCTGCAGTCTATATCATTGGAGGGGTTGGAGAAAAACGTTACTATAATGACATTTGGATCTTTGATATATGCACTTGTTCATGGACTCAACTCTATATAACTGGTCAAAAACCACAAGGGCGATTTTCTCATACTGCTGTTGTTATAGACATGGATATTGTCATCTATGGCGGGTGTGGTGAAGATGAAAATCCTCTCAATGAATTGTTAGTTTTGCAGCATGAAGCAGAGCCAAATCCACGTTACAACGCGAAAACTATGTTGATGGGGTCTAATGTGAAAGAAGGAGGAGCTTATGACTTTGATTCAGGTACTTCACAACAGAAGAGGAGGAGAGTTTCTACTACGAAGGTTTGGGATGTTGATTCTGAACAAGAAGAACACTCTCTTTCACTATCACAGCATTCATCACCATCTCAATCTGATCAAGAACAGACTCTTGGTCAAAGATCAAATGCTTCTGTCACCGATTCGCAGCAGCGTCTTCTGTTCAAACAGATGAATCAAACACCAACCAATTGTCCATACACCAATGACTTGAGTAACAAGAAATCTATGAAGGATATCACTCAGGGAAATCCACAAAATCTTCCTTCTCTAGTTAATCAGCCAAAGCAAGAACAGTGCCACCTGATTGGTGCTGAAGTTCGAGGTAAAATAGATGGAGCCTTTGACTCAGGGTTACTCATGACTGCATCCGTGAATGGAGAGATTTTCAGAGGGGTCTTATTTGCTCCGGCAGTAAAGGTGGTTGAAACAAATTGCTCTCTAACTACTCAAACTCAACCACCATTTGTGAACTCCAACTCAGATCATTCCCCACAAATCAGGCGAGGCGCTCGTTCGTCGATACTATTCAAGGAGCATAGAGCAAGTCAGAGTGATCTTGAAGGGTTGCTTTTGACACTTGGAGGACCTGCTAGCGCAAATAATCCTGAGGAGGTAGATTATTTAGGAAGCAAATAA 1758 0.43 MSSTVLKQSNTRKFLNYKTSNHTLKMHRTLGSLVAEVAGKMKAMWLCPKVSGFDPSERWGHSACFFNGLMYVFGGCCGGMHFSDVLTLDLDKMVWRKVATTGENPGPRDSHSAVIVGHKMIVFGGSNGFKKVNHIHILDLVTKVWVSPECKGTPPSPRESHTAVLVGGYRLVIFGGSGEGRANYLNDLHILELGTMRWTCPELKGEFPVPRDSHSTIAIGNKLIVYGGDSGYQYHGNIDILDMETMTWSKLRIQGSSPGVRAGHAAVYIIGGVGEKRYYNDIWIFDICTCSWTQLYITGQKPQGRFSHTAVVIDMDIVIYGGCGEDENPLNELLVLQHEAEPNPRYNAKTMLMGSNVKEGGAYDFDSGTSQQKRRRVSTTKVWDVDSEQEEHSLSLSQHSSPSQSDQEQTLGQRSNASVTDSQQRLLFKQMNQTPTNCPYTNDLSNKKSMKDITQGNPQNLPSLVNQPKQEQCHLIGAEVRGKIDGAFDSGLLMTASVNGEIFRGVLFAPAVKVVETNCSLTTQTQPPFVNSNSDHSPQIRRGARSSILFKEHRASQSDLEGLLLTLGGPASANNPEEVDYLGSK* 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0412 585 Gene3D - 42 201 IPR015915 GO:0005515
Amo16g0412 585 SUPERFAMILY Galactose oxidase, central domain 50 336 IPR011043 -
Amo16g0412 585 Pfam Galactose oxidase, central domain 267 302 - -
Amo16g0412 585 Pfam Galactose oxidase, central domain 304 336 - -
Amo16g0412 585 PANTHER OS01G0300900 PROTEIN 32 350 - -
Amo16g0412 585 MobiDBLite consensus disorder prediction 362 465 - -
Amo16g0412 585 Gene3D - 202 415 IPR015915 GO:0005515
Amo16g0412 585 PANTHER KELCH REPEAT DOMAIN 470 532 - -
Amo16g0412 585 PANTHER KELCH REPEAT DOMAIN 32 350 - -
Amo16g0412 585 MobiDBLite consensus disorder prediction 394 465 - -
Amo16g0412 585 MobiDBLite consensus disorder prediction 377 393 - -
Amo16g0412 585 PANTHER KELCH REPEAT DOMAIN 362 468 - -
Amo16g0412 585 Pfam Galactose oxidase, central domain 68 114 - -
Amo16g0412 585 Pfam Galactose oxidase, central domain 170 219 - -
Amo16g0412 585 PANTHER OS01G0300900 PROTEIN 470 532 - -
Amo16g0412 585 PANTHER OS01G0300900 PROTEIN 362 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0412 Amo-Chr16 6670930 6674989 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0412 197 336 Acyl Lipid Metabolism Gene Families AT3G05420 26.752 1.24e-13 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0412 K20285 - gmx:100801275 706.057
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0412 16 6670930 6674989 Amo16g0412 16 6670930 6674989 ECH