Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0410 ATGGCATTATTCGAAACAGTTGCCTACTCTCTATCTCGCACACCAACCGCCACAACCAACGTCGTCTTCTCCAACTCTACTATCAGACCACTCACACCTTCTTCTTCGTCTTCCTTCTATTCTCGAGTCCTCCGTTGCCGATCGAATTCCAACTGCCTTCTTTTGACTCCACGGTTTACTTTTGCTGTGAAAGCTTGCGTCAAGGTCGAAGAGAAGGATGTTGCCGCGACTAGTGGAGCTGAAGGAGGAGAGTGGGGAAAGGTCTCTGCGGTGTTGTTTGACATGGACGGTGTGCTCTGCAACAGCGAGGAACCTTCTAGAAGAGCCGCTGTTGATGTCTTCGCCGAGATGGGCGTCCAAGTCACCGTCGATGACTTCGTCCCATTCATGGGAACAGGAGAAGCAAACTTTCTGGGAGGTGTTGCCTCTGTTAAGGGAGTTAAAGGATTTGATACCGAAGCTGCAAAAAAGAGATTCTTTGAAATATATTTGGATAAGTATGCCAAACCAGATTCCGGAATAGGATTTCCTGGTGCCAGTGAACTTATTTCTCAGTGTAAAAGCAAAGGCATTAAGGTGGCTGTTGCATCTAGTGCTGATCGCATAAAAGTTGATGCTAATCTAGCTGCTGCTGGTTTGCCATTGTCATTGTTTGATGCAATTGTGTCTGCAGATGCTTTTGAGAATTTGAAACCTGCTCCTGATATTTTCTTAGCTGCATCAAAAATATTGGATGTGCCTCCCAGTGAGTGTATAGTTATAGAAGATGCACTAGCTGGAGTTCAGGCTGCTAAAACTGCACAAATGAGATGCATAGCTGTTAGAACTACGTTGTCAGATGAGGCTTTGGAATCTGTTGGTCCATCACTCATCCGAGATGACATAGGAAATATTTCACTTGATGACATTCTCAGTGGAGGCTCTGTTGGATATAATAAGAGGGTTCAGGGATCTGAAACATCAAATGATTCTGCACAATCTTCCTCTGCTATGCTTGCTGTTGAAAAAGATGATAGAGCTAGAAAAACTATCAGTGGTAGTGACAAGGGAATATTCCCAACTGAAGGGTTACAGGGTTCTCGGCGCGATATAATGAGATTCGGGAGTCTTGGTATTGCTATCTCTTGCCTTGTTTTCACAATTAGTAACTGGAAGGCAATGCAATATGCTTCACCCAAAGCAATATGGAATCTGTTGTTTGGAGTCACCCAACCATCCATGGAACAGAAAGAAGATGATAGGGTCCAGCAATTTGTGAATTACATAACTGATCTAGAGAGCAGGGGAAACACTCAGATTGTTCCAGAATTTCCATCGAAACTTGATTGGCTGAATACAGCTCCACTACAATTTCGCAGGGATCTGAAAGGAAAAGTTGTTGTCCTGGATTTCTGGACTTATTGTTGTATAAACTGTATGCATGTCTTACCAGACCTAGAGTTTTTGGAGAAGAAATTCAAAGATATGCCGTTCATTGTTGTGGGTGTTCATTCTGCGAAGTTCGATAATGAGAAAGATTCTGAAGCCATTCGTAATGCAGTTCTACGCTATGATATCACTCATCCGGTTGTGAATGATAATGACATGTATCTTTGGCGCAAGTTAGGCATAAATTCATGGCCAACATTTGCTGTCGTTGGCCCCAATGGTAAGCTCCTAGCACAACTTGCTGGAGAAGGTCACAAGAAGGATCTTGATGATTTTGTGGAGGCAGCACTGATGTTTTATGGAAAACGTAATTTGTTGGATAATACACCAATTACGTTGAATTTGGAGAAAGATAATGATCCTCGGCTTTCAGCATCTCCATTGAAGTTCCCTGGAAAGCTAGCAATTGATATCCTCAACAACAGGCTTTTTATTTCTGACAGCAACCATAACCGTATAGTGGTTACCGACCTTGATGGGAACTTCATTGTACAAATTGGTAGCAGTTGGGAGCAAGGTCTGCAGGATGGTTCATTTGATGATGCCACCTTTAACCGACCTCAGGGCCTTGCTTATAATGCAAAGAAAAATATCGTTTATGTTGCAGATACTGAAAACCATGCTTTGAGGGAAATTGATTTCATTAATGAGAAAGTGCGTACTCTTGCTGGAAATGGGACCAAGGGCTCTGATTATATTGGAGGAGGAAAAGGAGACACTCAGCTTCTCAATTCCCCTTGGGATGTCTGCTTTCATCCAGTTGAAGAGAAAATTTATATTGCAATGGCTGGCCAACATCAGATTTGGGAGCACAATATATTGGACGGAATTACGAAAGTCTTTAGTGGCGATGGTTATGAAAGAAATCTAAATGGATCAAGTCCTACAAGTTCGTCATTTGCACAACCTTCTGGTCTTTCATTCTCTCAAGATCTAACGGAGATCTACGTTGCTGATAGTGAGAGTAGTTCTATCCGAGTTGTTGATCTGAAAACAGGAGGATCTCGTCTGATAGCTGGTGGTGACCCAATCTTCCCAGATAATTTGTTTAAGTTTGGTGATCAAGATGGAATAGGCTCTGAAGTACTCCTTCAACATCCATTGGGGGTTACATGTGCAAAAGATGGTGAAGTTTATATTGCCGATAGCTACAATCACAAGATCAAGAAGTATGATCCAACTAGTAAAAGAGTTAGCAGCATTGCAGGAACAGGAAAAGCTGGTTTCAGGGATGGAACAGCTTTGACGTCTCAGCTATCTGAACCAGCAGGGATTGTTGAAGGGAATGGGAGATTATTTATTGCAGATACAAATAACAGCTTAATCCGATATCTGGATTTGATAAGTGATGAATTTTTGCTTCATACTTTAGAGCTTAAAGGATTTCAGCCTCCTAAACCGAAATCAAGATCTTTGAAACGCCTCAGAAGACGACCATCAGCTGACACAATGACTATTATGATTGATCCTATTTCATCAAATGAGGGAAACTTGTATATTGATATTGCATTACCAAATGAGTATCATTTCTCAAAGGAAGCACGCAGTAGATTTAGTGCTGATACCGAACCTGCGGATGCTGTAAACATTGATCCTTTGGACGGATTCCTTAGTTCAGAAGGATCAGCAACGCTTCGCTTTAAGAGGTTATCTAACTCGGCTTCCATGGGTAGAATTAATTGCAAGGTTTACTATTGCAAGGAAGATGAAGTATGTTTGTACCAATCTTTGCTGTTTGAGATTCCCTTCCGAGAGGGAGTTCCTAGCGCTAACAAGGCAGACGTCACTCTTGCTCATCTTGTGAAGCCCAAAACTCCCAACAACTTCTTACTGCCCTCGGTTGCCCCGTGA 3279 0.423 MALFETVAYSLSRTPTATTNVVFSNSTIRPLTPSSSSSFYSRVLRCRSNSNCLLLTPRFTFAVKACVKVEEKDVAATSGAEGGEWGKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVQVTVDDFVPFMGTGEANFLGGVASVKGVKGFDTEAAKKRFFEIYLDKYAKPDSGIGFPGASELISQCKSKGIKVAVASSADRIKVDANLAAAGLPLSLFDAIVSADAFENLKPAPDIFLAASKILDVPPSECIVIEDALAGVQAAKTAQMRCIAVRTTLSDEALESVGPSLIRDDIGNISLDDILSGGSVGYNKRVQGSETSNDSAQSSSAMLAVEKDDRARKTISGSDKGIFPTEGLQGSRRDIMRFGSLGIAISCLVFTISNWKAMQYASPKAIWNLLFGVTQPSMEQKEDDRVQQFVNYITDLESRGNTQIVPEFPSKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKFKDMPFIVVGVHSAKFDNEKDSEAIRNAVLRYDITHPVVNDNDMYLWRKLGINSWPTFAVVGPNGKLLAQLAGEGHKKDLDDFVEAALMFYGKRNLLDNTPITLNLEKDNDPRLSASPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSWEQGLQDGSFDDATFNRPQGLAYNAKKNIVYVADTENHALREIDFINEKVRTLAGNGTKGSDYIGGGKGDTQLLNSPWDVCFHPVEEKIYIAMAGQHQIWEHNILDGITKVFSGDGYERNLNGSSPTSSSFAQPSGLSFSQDLTEIYVADSESSSIRVVDLKTGGSRLIAGGDPIFPDNLFKFGDQDGIGSEVLLQHPLGVTCAKDGEVYIADSYNHKIKKYDPTSKRVSSIAGTGKAGFRDGTALTSQLSEPAGIVEGNGRLFIADTNNSLIRYLDLISDEFLLHTLELKGFQPPKPKSRSLKRLRRRPSADTMTIMIDPISSNEGNLYIDIALPNEYHFSKEARSRFSADTEPADAVNIDPLDGFLSSEGSATLRFKRLSNSASMGRINCKVYYCKEDEVCLYQSLLFEIPFREGVPSANKADVTLAHLVKPKTPNNFLLPSVAP* 1093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0410 1092 TIGRFAM HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 215 274 IPR006439 -
Amo16g0410 1092 SFLD Haloacid Dehalogenase 87 297 - -
Amo16g0410 1092 CDD HAD_BPGM-like 90 276 - -
Amo16g0410 1092 PANTHER NHL REPEAT-CONTAINING PROTEIN 2 194 1089 - -
Amo16g0410 1092 Gene3D - 825 921 IPR011042 -
Amo16g0410 1092 Gene3D - 578 747 IPR011042 -
Amo16g0410 1092 Gene3D Putative phosphatase; domain 2 101 172 IPR023198 -
Amo16g0410 1092 Gene3D - 90 281 IPR023214 -
Amo16g0410 1092 ProSiteProfiles NHL repeat profile. 840 870 IPR001258 GO:0005515
Amo16g0410 1092 SUPERFAMILY HAD-like 49 300 IPR036412 -
Amo16g0410 1092 ProSiteProfiles Thioredoxin domain profile. 409 574 IPR013766 -
Amo16g0410 1092 SUPERFAMILY Thioredoxin-like 432 570 IPR036249 -
Amo16g0410 1092 CDD NHL-2_like 642 982 IPR045302 -
Amo16g0410 1092 Pfam NHL repeat 840 867 IPR001258 GO:0005515
Amo16g0410 1092 Pfam NHL repeat 660 685 IPR001258 GO:0005515
Amo16g0410 1092 Pfam Thioredoxin-like 457 551 IPR012336 -
Amo16g0410 1092 Pfam Haloacid dehalogenase-like hydrolase 91 274 IPR041492 -
Amo16g0410 1092 SFLD C1.5.6: HAD, Beta-PGM, Phosphatase Like 87 297 - -
Amo16g0410 1092 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 88 99 IPR006439 -
Amo16g0410 1092 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 186 199 IPR006439 -
Amo16g0410 1092 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 236 256 IPR006439 -
Amo16g0410 1092 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 218 234 IPR006439 -
Amo16g0410 1092 SUPERFAMILY NHL repeat 600 925 - -
Amo16g0410 1092 Gene3D Glutaredoxin 403 575 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0410 Amo-Chr16 6641387 6652087 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0410 - - aip:107645958 2098.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0410 16 6641387 6652087 Amo16g0410 16 6641387 6652087 ECH