Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0401 ATGGGTTCCGGTTGCGTCGGTCACTGCCTTCCATTCTCATTCTCATTCTCATTTCCATTATCGTTCTTGTTAGTGCTGTGGTTCTATTCAATTTCTTCAGCTTATGGATGCGATAAAGCTCCAGCTATATTCGTGTTCGGCGATTCCAACTCGGACACGGGTGGACTCGCCTCTGGACTCGGTTACCCTATCAACCTCCCCAATGGACGCAGCTTCTTCCATAGATCCACCGGTCGCTTGTGCGATGGACGCCTCATAATCGATTTGCTCTGCCAAAGTATGAACATGAGTTTATTGAACCCATATATGGACCCGTTGTCTGGATCGACGTTCACAAATGGAGCAAACTTTGCAGTTGTAGGGTCCTCTACACTCCCCAAGTATCTTCCATTCTCTTTAAATATACAAGTCATGCAGTTCAGGCGTCTCAAAGCTCGTGCACTTGAACTTGTTAATGCAGGTGCAACCAATTTGATAAATGATGGAGGGTTCCGAGATGCACTCTACTTGATTGATATTGGGCAAAATGACATTGCTGATTCATTTACCAAAAATTTGTCATATGCGCAAGTGATCAAGAGGATCCCAACAGTTGTTGCCGAGATTGAAACGGCTGTTAGGAGTTTGTATAATGAAGGTGCCAGGAAGTTTTGGCTTCACAACACTGGACCCTTAGGATGTCTTCCCAAATTGATTGCACTGGCTCAAAAGAAGGATCTGGATTCATCTGGATGTCTATCTAGCTATAACTCTGCTGCAAGATTATTTAATGATGCACTGAATCGGTTGTCACTTAAGCTAAGAACTCAATTGAAGGATGCTACCATAGTCTATGTCGATATTTATGCCATTAAGTATGATCTTATCACAAATGCCGCCAAATATGGTTTCTCGAATTCGCTGATGGTGTGCTGCGGGTCTGGAGGGCCTCCTTACAATTTTGACCCAAGGGTGACATGTGGGCAACCAGGGTATCAGGTTTGTAGTGAAGGATCAAAATATGTTAGCTGGGATGGAATCCATCTTACTGAGGCTGCAAATACATTCATAGCTTCAAAAATTCTTTCCAAGGCCTATTCCACACCACCTACAGCTTTTGATTTCTTCTGTAATCACTGA 1119 0.4361 MGSGCVGHCLPFSFSFSFPLSFLLVLWFYSISSAYGCDKAPAIFVFGDSNSDTGGLASGLGYPINLPNGRSFFHRSTGRLCDGRLIIDLLCQSMNMSLLNPYMDPLSGSTFTNGANFAVVGSSTLPKYLPFSLNIQVMQFRRLKARALELVNAGATNLINDGGFRDALYLIDIGQNDIADSFTKNLSYAQVIKRIPTVVAEIETAVRSLYNEGARKFWLHNTGPLGCLPKLIALAQKKDLDSSGCLSSYNSAARLFNDALNRLSLKLRTQLKDATIVYVDIYAIKYDLITNAAKYGFSNSLMVCCGSGGPPYNFDPRVTCGQPGYQVCSEGSKYVSWDGIHLTEAANTFIASKILSKAYSTPPTAFDFFCNH* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0401 372 CDD SGNH_plant_lipase_like 41 357 IPR035669 -
Amo16g0401 372 Gene3D SGNH hydrolase 36 360 IPR036514 -
Amo16g0401 372 SUPERFAMILY SGNH hydrolase 42 356 - -
Amo16g0401 372 Pfam GDSL-like Lipase/Acylhydrolase 43 354 IPR001087 GO:0016788
Amo16g0401 372 PANTHER OS01G0329900 PROTEIN 21 371 - -
Amo16g0401 372 PANTHER ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN 21 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0401 Amo-Chr16 6498642 6502849 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0401 40 354 Acyl Lipid Metabolism Gene Families AT4G10950 26.284 1.61e-29 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0401 - - gmx:100797617 582.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0401 16 6498642 6502849 Amo16g0401 16 6498642 6502849 ECH