Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0357 ATGGCGTTTGCTTCAAACTCGGTTCTGAAAACGCTGAGGCTGAAGAATCCAAAGCTGGTGCTTTTGGAATCATGCAGCAACCTGATCGACCTCACAATRATCCACGCCCACATGCTCCGAACCCACTTCTTCTTCGACGTCTTTGCCGTCAGTCGCCTCATCGCTCTCTGCACAGACTCCAACAAGAACCTTCTCCACTACGCCATAAGGCTATTCCCCCAAATCGAAAACCCKAACCTATTCATCTTGAACGCCCTCATACGAGGTTGTTCCACCAGCGATGACCCCGCTGCTTCCTTTCGCTATTACATCCAATCGCAGCGCATTGGTCTCTTGCCTGATAACATCACTTACCCATTTCTGGTTAAGGCTAGTGCTCAACTTGAGAATGCTGTTATGGGCACGCAAGCACATGGTCAAATCATAAAGCATGGATTTGAACGCGATTGCTATGTCCAAAACTCCCTCGTTCATATGTATGCCACTGTTGAGGATTCAAAGTCTGCAAGATGCGTTTTTGAAGAGATTTCTGGGTTTGATGTGGTGTCTTGGACTTCCATGATTGCTGGGTACCATAAAGCGGGGGATGTTGACTCTGCACGCGAACTGTTTGATATAATGCCCGAGAGAAATTTGGTGACTTGGAGCACTATGATTAGTGGGTATTCCCGAAACAATAGGTATGATAAGGCTGTTGAGCTGTTTCGTGTTCTTCGGAGTGAAGGGGTGGTGGCTAATGAGCCTGTCATGGTGGGGGTGATATCCGCTTGTGCTCATCTGGGTGCTCTTGCTATGGGGAAGGAAGCTCATGAGTATGTGGTTATGAATGGCTTGTCTTTGAATCTGATTCTTGGGACAGCTCTTGTTGACATGTATGCGAGATGTGGAAACATTGCGAAAGCTATTCYGGTTTTTGAGCAGTTGGCCGAGAAGGACYCACTTTGTTGGACAGCTTTGATTGCTGGACTAGCCATGCACGGCCATGCAGAGAAAGCGCTTTGGTATTTTTCGGAAATGGTGAAATCCGGGCTAGTTCCGTGGGACATTACATTTACGGCGGTGTTGACAGCTTGCAGCCATGGAGGATTGGTAGATAGYGGCCTAGAAATATTTGAGAGCATGAAACATGATCATGGAATTGAGCCAAGATTGGAGCATTATGGATGTATGGTTGACCTACTTGGCCGTGCAGGGAAGTTGGCGGAGGCYGAGAAATTTGTTCTTGAAATGCCCYTAAAGCCGAATGCTCCGATATGGGGAGCATTGCTAGGAGCTTGCCGGATTCACAGAAATGCAGAGGTTGGGGAGAGAGTTGGAAAGATTTTGATAGAGATGCAACCAGAACACAGTGGTTACTATGTGCTGCTTTCAAACATATATGCTCGCACAAACAAGTGGAGAGATGTTACCATTATGAGAGAAATCATGAAGGAAAAAGGAGTAAGAAAGCCTCCTGGGTATAGTCTCATTGAGGTAGATGGAAAAGTTCATGAATTTACAATTGGAGATAAATCACACCCAGAAATCGAGAAAATAGAGAGAATATGGGAAGATATACTGCAAAAAATAAGGCTGGCAGGATACATTGGAAATACTGATGAAGCTTTGTTTGACATAGATGAGGAAGAAAAGGAAGATGCACTTYACAGGCATAGTGAGAAGCTGGCAATTGCATATGGAATTATGAAGATTCGASCRCCTTCACCYATTCGGATTGTGAAYAACTTGCGGGTRTGTGAAGATTGTCACACTGCTACAAAGTTMATTTCAAAGGTTTTCCAAGTAGAGTTGATTGTGAGAGATCGAAACCGATTCCATCACTTTAAAGAAGGCACGTGTTCTTGTATGGATTACTGGTGA 1860 0.4478 MAFASNSVLKTLRLKNPKLVLLESCSNLIDLTXIHAHMLRTHFFFDVFAVSRLIALCTDSNKNLLHYAIRLFPQIENPNLFILNALIRGCSTSDDPAASFRYYIQSQRIGLLPDNITYPFLVKASAQLENAVMGTQAHGQIIKHGFERDCYVQNSLVHMYATVEDSKSARCVFEEISGFDVVSWTSMIAGYHKAGDVDSARELFDIMPERNLVTWSTMISGYSRNNRYDKAVELFRVLRSEGVVANEPVMVGVISACAHLGALAMGKEAHEYVVMNGLSLNLILGTALVDMYARCGNIAKAIXVFEQLAEKDXLCWTALIAGLAMHGHAEKALWYFSEMVKSGLVPWDITFTAVLTACSHGGLVDSGLEIFESMKHDHGIEPRLEHYGCMVDLLGRAGKLAEAEKFVLEMPLKPNAPIWGALLGACRIHRNAEVGERVGKILIEMQPEHSGYYVLLSNIYARTNKWRDVTIMREIMKEKGVRKPPGYSLIEVDGKVHEFTIGDKSHPEIEKIERIWEDILQKIRLAGYIGNTDEALFDIDEEEKEDALXRHSEKLAIAYGIMKIRXPSPIRIVNNLRVCEDCHTATKXISKVFQVELIVRDRNRFHHFKEGTCSCMDYW* 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0357 619 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 211 245 IPR002885 -
Amo16g0357 619 Pfam PPR repeat 213 243 IPR002885 -
Amo16g0357 619 Pfam PPR repeat 386 411 IPR002885 -
Amo16g0357 619 Pfam PPR repeat 286 311 IPR002885 -
Amo16g0357 619 Pfam PPR repeat 182 211 IPR002885 -
Amo16g0357 619 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 82 593 - -
Amo16g0357 619 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 82 593 - -
Amo16g0357 619 Pfam E+ motif 496 523 IPR046849 -
Amo16g0357 619 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 180 210 IPR002885 -
Amo16g0357 619 Pfam PPR repeat family 312 359 IPR002885 -
Amo16g0357 619 TIGRFAM PPR: pentatricopeptide repeat domain 213 246 IPR002885 -
Amo16g0357 619 TIGRFAM PPR: pentatricopeptide repeat domain 182 212 IPR002885 -
Amo16g0357 619 TIGRFAM PPR: pentatricopeptide repeat domain 349 382 IPR002885 -
Amo16g0357 619 TIGRFAM PPR: pentatricopeptide repeat domain 315 347 IPR002885 -
Amo16g0357 619 Pfam E motif 429 491 IPR046848 -
Amo16g0357 619 Gene3D Tetratricopeptide repeat domain 286 511 IPR011990 GO:0005515
Amo16g0357 619 Gene3D Tetratricopeptide repeat domain 18 178 IPR011990 GO:0005515
Amo16g0357 619 Gene3D Tetratricopeptide repeat domain 179 276 IPR011990 GO:0005515
Amo16g0357 619 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 312 346 IPR002885 -
Amo16g0357 619 Pfam DYW family of nucleic acid deaminases 527 619 IPR032867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0357 Amo-Chr16 5612563 5614472 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0357 70 619 Glycoside Hydrolase AT3G49170 35.125 4.17e-120 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0357 - - gmx:100797063 1026.93