Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0349 ATGAATCAATTGGCGGACTTCGGACGCATATTCCAAATGTTTGATCATGATGACGACGGGAAGATCTCAAAGGAGGAGCTTTTAGAGTCCGTAACAAAACTAGGGTTAGGCGTCATGAAGCATGATTTGATTCAAATGATCGCGAGACTCGACGCGAATGGCGACGGATACGTAGACTTTGACGAGTTTGAGAGGTTGTACAAGAACGTAATGGGTGACGACGACGACGTCTGCGGCGGCGGCGGCGGCGACGAGGAAGAGGACATGAAGGAGGCTTTCAAATTGTTCGATCAAAATGGCGACGGGTTTGTTAGTGGTGAGGAATTGAGTTCGGTTTTGTGCTCATTGGGCTTAAGGCAAGGAAAGAAGACCTTAGAGGATTGCAAGAACTTGATCAAGAAAGTGGATTTGGATGGCGATGGCATGCTTGATTTCAAAGAGTTTAAGCAAATGATTAAGCTTGTCAACTAA 471 0.4607 MNQLADFGRIFQMFDHDDDGKISKEELLESVTKLGLGVMKHDLIQMIARLDANGDGYVDFDEFERLYKNVMGDDDDVCGGGGGDEEEDMKEAFKLFDQNGDGFVSGEELSSVLCSLGLRQGKKTLEDCKNLIKKVDLDGDGMLDFKEFKQMIKLVN* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0349 156 Gene3D - 1 79 - -
Amo16g0349 156 SUPERFAMILY EF-hand 2 155 IPR011992 -
Amo16g0349 156 SMART efh_1 127 155 IPR002048 GO:0005509
Amo16g0349 156 SMART efh_1 88 116 IPR002048 GO:0005509
Amo16g0349 156 SMART efh_1 6 34 IPR002048 GO:0005509
Amo16g0349 156 SMART efh_1 42 70 IPR002048 GO:0005509
Amo16g0349 156 Gene3D - 80 153 - -
Amo16g0349 156 ProSiteProfiles EF-hand calcium-binding domain profile. 84 119 IPR002048 GO:0005509
Amo16g0349 156 ProSiteProfiles EF-hand calcium-binding domain profile. 123 156 IPR002048 GO:0005509
Amo16g0349 156 Pfam EF-hand domain pair 86 152 IPR002048 GO:0005509
Amo16g0349 156 Pfam EF-hand domain pair 9 68 IPR002048 GO:0005509
Amo16g0349 156 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 5 153 - -
Amo16g0349 156 ProSitePatterns EF-hand calcium-binding domain. 15 27 IPR018247 -
Amo16g0349 156 ProSitePatterns EF-hand calcium-binding domain. 97 109 IPR018247 -
Amo16g0349 156 ProSitePatterns EF-hand calcium-binding domain. 136 148 IPR018247 -
Amo16g0349 156 ProSitePatterns EF-hand calcium-binding domain. 51 63 IPR018247 -
Amo16g0349 156 PANTHER CALMODULIN-LIKE PROTEIN 3 5 153 - -
Amo16g0349 156 ProSiteProfiles EF-hand calcium-binding domain profile. 38 73 IPR002048 GO:0005509
Amo16g0349 156 CDD EFh 90 153 IPR002048 GO:0005509
Amo16g0349 156 ProSiteProfiles EF-hand calcium-binding domain profile. 2 37 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0349 Amo-Chr16 5404843 5405313 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0349 5 153 EF-hand Containing Proteins AT2G43290 54.362 7.76e-48 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0349 K13448 - gmx:100806637 181.415