Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0348 ATGTGGGCTCTTCGTCGAGCTTCTCTTCCTCTCAGGAACCGAGGGTTTAATGTGAGAGCTTCTTGCATCAAATCAGTTTCGGGTACTCGGGTGGAAGATGATTCTAGTACGTTGGACTCATCTAGAATGGCATATGGTCGTTTTTTGTTGCCGAATATGTTCTACCATTCCGGGCATGCCTCCTTAAAATTCACCGTGAGTAGGCGCGAACTTTCTTCGCAAGCTGATGCCAGTAGCACGAAAGATCAGGATGATTTGGAGGATGGGTTTTCTGAGCTTGAGACACCAGCTGCTGATTCTGAATATGGTAAAGACGAATTCAATGATATTAAAGATGGTGAGGAGCCACGCGAGGAGTTGGAGTTTTCAGACACTGAGGTTGAACCAAGTGAGAAAAAAGTACGTCGACGAGCTCAGTCCGAAATTTTCAAATTGATTGATAATTCTCCAACTACTTCTGTTCAAGTGCTTATGGATAAGTGGGTTGAAGAAGGGAAAGAACTAAGCAGACAAGATATCTCACTAGCCATGGTTAATCTTCGGAGGCGCAAACTGTATTTTAAAGCTTTTCAGCTCTCAGAGTGGGTTGTATCAAAAAGTCAGCTTGAGGTTACTGAGAAAGATCATGCTACCCGTGTTGATTTGATTGCTAAATTGCGTGGGTTACATGAAGCAGAGATGTACATTGAGCGTATTCCAGAATCTTTTAAAGGAGAGACAGTATATCAAACCCTTTTAGCAAGTTGTGTTGCTCAGAACAATTTGAAGAAAGCAGAGGAAACTTTCAACAAAATGAAGGATTTGAAATTCCCTCTTACATCATTTGTTTGGAATCAGTTGCTTCTTCTGTATAAGAGGCATGACAAGAAGAAAATAGCCGATGTATTGTTGATGATGGAAAATGAGAATGTCAAACCTTCTCCTTTTACTTATAAAATATTAATAGACGCAAAAGGCCAGTCCAAAGATATTGATGGCATGGATCTAATTGTTGAGAAAATGAAGGCTCAAGGGATTGAACCAGACATCCGAACAAAAGCAGTTTTGGTTGGACACTACAAAACTGCTGGGCTTGAAAAAAAAGCCGAAGATATGTTGAAGGAAATGGAAGGTGAAAATTTGGAAGAGAATTCTTGGCTTGGTCGATATTTGCTTCCTCTATACGCAAATCTGGGTAAGGCTGATGAAGTGGGAAGAATTTGGGAGGTCTGTCAGGCTTCCCCTCGAATTGAAGATTGTCTCGCTGCGATTGAAGCTTTTGGAAAGTTGAAGAAAATTGATGAAGCAGAGGCTGTTTTCGAAATGATATCAAAGAGGTGGAAGCTTTCTTCCAAGAACTACTCAGTCATGCTGAAGGTTTATGCAAATAATAAGATGCTAGCAAAGGGCAAAGATCTCATTAAGCGAATGGCAGAGAGCGGGTGTCAAATAGGCCCATTGACATTGGACGACCTAGTGAAACTTCACATCCAAGCAGGGGAAGTGGAGAAGGCAGACACTATTCTGCAAAAGGCTATCATGCAAAGCCAGTTGAAACCATTAATCATTTCTTATATTGCTATTATGGAGCAGTATGCTAAGAGGGGCGACGTCCATAATTCAGAAAAGATTTTGCACAAAATCAAACAAGCTGGCTACACGATTCGTCTGAGGCAATACCAAATTCTCGTACAGGCCTATATAAATGCCAAGCTTCCGGCCTATCGGATTAGGGACAGCATGAAGGCTGATAACGTATTTCCCAACAGGGATTTTGCAAATCTGTTGGCTCAAGTTGATGGTTTTAGGAAGAATCCAGCTTCGGATTTGCTTGATTGA 1818 0.4147 MWALRRASLPLRNRGFNVRASCIKSVSGTRVEDDSSTLDSSRMAYGRFLLPNMFYHSGHASLKFTVSRRELSSQADASSTKDQDDLEDGFSELETPAADSEYGKDEFNDIKDGEEPREELEFSDTEVEPSEKKVRRRAQSEIFKLIDNSPTTSVQVLMDKWVEEGKELSRQDISLAMVNLRRRKLYFKAFQLSEWVVSKSQLEVTEKDHATRVDLIAKLRGLHEAEMYIERIPESFKGETVYQTLLASCVAQNNLKKAEETFNKMKDLKFPLTSFVWNQLLLLYKRHDKKKIADVLLMMENENVKPSPFTYKILIDAKGQSKDIDGMDLIVEKMKAQGIEPDIRTKAVLVGHYKTAGLEKKAEDMLKEMEGENLEENSWLGRYLLPLYANLGKADEVGRIWEVCQASPRIEDCLAAIEAFGKLKKIDEAEAVFEMISKRWKLSSKNYSVMLKVYANNKMLAKGKDLIKRMAESGCQIGPLTLDDLVKLHIQAGEVEKADTILQKAIMQSQLKPLIISYIAIMEQYAKRGDVHNSEKILHKIKQAGYTIRLRQYQILVQAYINAKLPAYRIRDSMKADNVFPNRDFANLLAQVDGFRKNPASDLLD* 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0348 605 PANTHER OS12G0527900 PROTEIN 32 605 - -
Amo16g0348 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 307 341 IPR002885 -
Amo16g0348 605 Pfam Pentacotripeptide-repeat region of PRORP 238 400 IPR033443 -
Amo16g0348 605 Pfam PPR repeat 417 438 IPR002885 -
Amo16g0348 605 Pfam PPR repeat 517 545 IPR002885 -
Amo16g0348 605 Pfam PPR repeat 447 475 IPR002885 -
Amo16g0348 605 PANTHER OS01G0280400 PROTEIN 32 605 - -
Amo16g0348 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 443 477 IPR002885 -
Amo16g0348 605 MobiDBLite consensus disorder prediction 98 118 - -
Amo16g0348 605 MobiDBLite consensus disorder prediction 94 133 - -
Amo16g0348 605 Gene3D Tetratricopeptide repeat domain 238 413 IPR011990 GO:0005515
Amo16g0348 605 Gene3D Tetratricopeptide repeat domain 415 600 IPR011990 GO:0005515
Amo16g0348 605 TIGRFAM PPR: pentatricopeptide repeat domain 447 476 IPR002885 -
Amo16g0348 605 TIGRFAM PPR: pentatricopeptide repeat domain 241 272 IPR002885 -
Amo16g0348 605 TIGRFAM PPR: pentatricopeptide repeat domain 309 343 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0348 Amo-Chr16 5398241 5401678 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0348 150 545 EF-hand Containing Proteins AT1G02150 24.878 1.57e-37 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0348 - - mtr:MTR_7g089770 762.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0348 16 5398241 5401678 Amo19g2920 19 134822634 134823281 ECH
Amo16g0348 16 5398241 5401678 Amo16g0348 16 5398241 5401678 ECH