Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0328 ATGGATACTTTGCTCAAAACACCTAACAAGCTTGAATTCTTGCACCCACTACACGGTTATTCTGAAAAGCTGGGAACTTTAGCCCCTTCTAAGTTGCAAAGCCATGACCTTAGATTTGGATTTGGTTCTAAGAAGCAGCCACTTGTGAAGTGGGGTAAGTGCGGTGGTGGTGGTTTGAGGGCTAGTAGCAGTGCCCTTCTTGAACTTGTTCCTGAGATCAAGAAAGAGAATCTTGATTTTGAGCTTCCCTTGTATGATTCCTCAAAGGGTGCTGTGGTGGACCTTGCTGTTGTGGGAGGAGGACCGGCAGGGCTCGCCGTGGCGCAGCAGGTTTCTGAGGCAGGGCTCTCTGTTTGTGCCATTGACCCTAACCCTAGGTTGATTTGGCCCAACAATTACGGCGTTTGGGTCGATGAATTCGAGGCCATGGACTTGCTTGATTGCCTTGACACCACTTGGTCTGGTGCTGTTGTCTACATTGATGACAACAAGAAGAAGGATCTTGATAGGCCTTATGGCAGGGTCAATAGGAAGCAATTGAAGTCAAAGATGATGCAGAAATGCATATCAAATGGTGTTAAGTTCCACCAAGCTAAAGTCATCAAGGTTATTCATGAGGATGCCAAATCTTTGTTGATTTGTAATGATGGTGTCACGGTTCAGGCTACCGTGATTCTTGATGCAACTGGCTTTTCCAGATGCCTTGTTCAGTATGATAAACCTTATAATCCCGGTTACCAGGTTGCTTATGGAATCTTGGCTGAGGTTGATGAACATCCATTTGATGTGGATAAAATGCTTTTCATGGATTGGAGAGATTCCCATCTGGATGGGGACATGGTGCTGAAGGAAAGGAATAGCAGAATTCCCACCTTCCTATATGCCATGCCCTTTTCATCCAATCGGATATTTCTTGAAGAAACCTCTCTTGTTGCGCGGCCAGGGTTACGTATGGATGATATACAGGAAAGAATGGTTGCAAGGTTGAAACACTTGGGAATTAGAGTGAAGAGCATTGAAGAAGATGAGCACTGTGTCATTCCCATGGGTGGTCCCCTCCCAGTTCTCCCCCAAAGAGTTGTTGGAATCGGCGGGACTGCAGGGATGGTGCATCCTTCAACTGGGTATATGGTAGCAAGGACTCTCGCCGCAGCTCCCATTGTTGCTAATGCCATTGTGCAAAGTCTTGGTTCCGACAGAGGTCTTTTGGGAGCCGATATATCCTCCCGAGTGTGGAAAGATTTATGGCCGATCCAGAGGCGGCGGCAGAGGGAGTTCTTCTGCTTTGGTATGGACATCTTGCTCAAGCTTGATTTACCAGGAACAAGGAGATTTTTCGATGCATTTTTCGATCTAGAACCTCGTTACTGGCATGGATTCTTGTCATCGAGATTGTTTCTCCCTGAACTCTTTTTTTTTGGGCTCTCTCTATTTTCCTATGCTTCCAATACATCTAGATTAGAGATTATGGCAAAGGGGACTCTTCCTTTGGCAAACATGATCAACAACTTGTTAAAAGATACAGAATAA 1530 0.4569 MDTLLKTPNKLEFLHPLHGYSEKLGTLAPSKLQSHDLRFGFGSKKQPLVKWGKCGGGGLRASSSALLELVPEIKKENLDFELPLYDSSKGAVVDLAVVGGGPAGLAVAQQVSEAGLSVCAIDPNPRLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVYIDDNKKKDLDRPYGRVNRKQLKSKMMQKCISNGVKFHQAKVIKVIHEDAKSLLICNDGVTVQATVILDATGFSRCLVQYDKPYNPGYQVAYGILAEVDEHPFDVDKMLFMDWRDSHLDGDMVLKERNSRIPTFLYAMPFSSNRIFLEETSLVARPGLRMDDIQERMVARLKHLGIRVKSIEEDEHCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANAIVQSLGSDRGLLGADISSRVWKDLWPIQRRRQREFFCFGMDILLKLDLPGTRRFFDAFFDLEPRYWHGFLSSRLFLPELFFFGLSLFSYASNTSRLEIMAKGTLPLANMINNLLKDTE* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0328 509 Pfam Lycopene cyclase protein 94 486 - -
Amo16g0328 509 SUPERFAMILY FAD/NAD(P)-binding domain 93 476 IPR036188 -
Amo16g0328 509 Gene3D - 91 433 IPR036188 -
Amo16g0328 509 PANTHER UBIQUINONE BIOSYNTHESIS MONOOXYGENASE COQ6, MITOCHONDRIAL 6 509 - -
Amo16g0328 509 TIGRFAM carotene-cycl: lycopene cyclase family protein 94 489 IPR010108 GO:0016117|GO:0016705
Amo16g0328 509 PANTHER LYCOPENE BETA CYCLASE, CHLOROPLASTIC 6 509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0328 Amo-Chr16 5096552 5098587 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0328 K06443 - gmx:100783830 900.968