Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0324 ATGGCGGAAGCGATGATGGTGGAGAACGGCAACGGCAACGGCAACGGCAAGGAGGACTACGGTGAGTGCTTGATCGGATACTTCGAGGAAGGTAGCCATGAGTCCCACAGGTACTACCTCTCCCGAAGAACCACCCTAGAGATGCTCAAGGACAGAGGCTACTCCATCCCTGCTTCTGAAATCGACCTCTCTCTCTCCCAATTCAGAGCCATTCACGGTGATTCCCCTGACGTCGACCGCCTCCGCTTCTCCGCCACTCACCTCTCTGATCCTTCCAAGAGGATTTTAGTTATCTTCTGTGGCCAACACATTGTGAAAGTTACTTCCATCCGCAGCATTGCAGCGCAGATTGTCAATAGAGAAACTTTAACTGGCCTCATTTTGATTGTTCAAAGTACTATTACTAGCCAGGCCTTGAAAGCTGTCAATCTTTTCTCATTCAAAGTTGAAATCTTTCAGATCACAGACTTGCTTATTAATATTACAAAGCATGTATTGAAGCCAAAGCATGAAATTCTAACTGACAAACAGAAAAAGAACCTCCTAAAGAAGTACAATTTAGAAGAAAAGCAGCTACCCCGCATTCTACAAACAGATGCAATTGCAAGATACTATGGACTAGAGAAAGGGCAAGTAGTTAAGATAACTTACAGTGGTGATATCACTCAGATGCATGTCGCCTATCGATGCGTTTGGTGA 699 0.4521 MAEAMMVENGNGNGNGKEDYGECLIGYFEEGSHESHRYYLSRRTTLEMLKDRGYSIPASEIDLSLSQFRAIHGDSPDVDRLRFSATHLSDPSKRILVIFCGQHIVKVTSIRSIAAQIVNRETLTGLILIVQSTITSQALKAVNLFSFKVEIFQITDLLINITKHVLKPKHEILTDKQKKNLLKKYNLEEKQLPRILQTDAIARYYGLEKGQVVKITYSGDITQMHVAYRCVW* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0324 232 SUPERFAMILY Eukaryotic RPB5 N-terminal domain 33 160 IPR036710 GO:0003677|GO:0003899|GO:0006351
Amo16g0324 232 Pfam RNA polymerase Rpb5, N-terminal domain 33 116 IPR005571 GO:0003677|GO:0003899|GO:0006351
Amo16g0324 232 Gene3D - 29 156 IPR036710 GO:0003677|GO:0003899|GO:0006351
Amo16g0324 232 PANTHER DNA-DIRECTED RNA POLYMERASE V SUBUNIT 5A 16 232 - -
Amo16g0324 232 PANTHER DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 16 232 IPR014381 -
Amo16g0324 232 Pfam RNA polymerase Rpb5, C-terminal domain 159 231 IPR000783 GO:0003677|GO:0003899|GO:0006351
Amo16g0324 232 Gene3D - 157 232 IPR035913 -
Amo16g0324 232 SUPERFAMILY RPB5-like RNA polymerase subunit 157 232 IPR035913 -
Amo16g0324 232 PIRSF RPB5 27 232 IPR014381 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0324 Amo-Chr16 5084452 5085843 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0324 K03013 - gmx:100306033 335.88