Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0301 ATGATGCCGCTAACAAAGCTTCTCTCAAGAACCGTCTCTTCTTGTTTTTCTTCCTCCAATGGCAGACCATTCGCCATGGCTGCAAAAGCCCTTCAACATTGCCGCTACTCTTCTGCGGCGGCGCAAGTTGCAGAGTCAGAAACAGAAGCACTCAAGGACTACGCAGATTACAGGAGGTCCCTTTATGGCCACATCACTCACAAGGCGCTTCTTGTTGATGCTGTTGGCACTCTTGTTCTCCCTTCTCAGCCCATGGCCCAGATATATAGGACAATTGGGGAGAAATATGGAGTGGAGTACTCTGAGGATGAGATATTGCATAGATACAGAAGAGCTTATAGTCAACCTTGGGGCAAATCTCGTCTCAGATATGTTAATGATGGTAGGCCATTCTGGCAATACATAGTTAGCTATTCCACCGGCTGTTCGGATTCTCAATACTTTGAAGAACTTTATAACTACTATATGACAGACAAGGCATGGCATCTTTGTGATCCTGAAGCAGAAAAAGTGTTTAATGCTCTTAGAAAATCTGGTGTCAAATTGGCTGTTGTATCGAATTTCGACACTCGACTGAGACCTGTCCTGCGGGCATTGAATTGTGAAAATTGGTTTGATGCAGTAGCAGTATCTGCTGAGGTTGCAGCTGAGAAGCCAAATCCAACCATATTTCTTAAAGCATGTGAACTACTGGGCGTAAACCCCGAGGATGCTGTTCATGTTGGTGATGATCGTAGAAATGATGTATGGGGTGCAAGAGATGCAGGCTGTGATGCTTGGCTTTGGGGAAGTGATGTTCACTCCTTTAAAGAGGTAGCTCAGAGGATTGGAGTGCAGGTCTGA 843 0.4543 MMPLTKLLSRTVSSCFSSSNGRPFAMAAKALQHCRYSSAAAQVAESETEALKDYADYRRSLYGHITHKALLVDAVGTLVLPSQPMAQIYRTIGEKYGVEYSEDEILHRYRRAYSQPWGKSRLRYVNDGRPFWQYIVSYSTGCSDSQYFEELYNYYMTDKAWHLCDPEAEKVFNALRKSGVKLAVVSNFDTRLRPVLRALNCENWFDAVAVSAEVAAEKPNPTIFLKACELLGVNPEDAVHVGDDRRNDVWGARDAGCDAWLWGSDVHSFKEVAQRIGVQV* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0301 280 Pfam Haloacid dehalogenase-like hydrolase 76 259 IPR041492 -
Amo16g0301 280 Gene3D - 83 156 IPR044924 -
Amo16g0301 280 TIGRFAM DREG-2: HAD hydrolase, REG-2-like, family IA 68 261 IPR011949 -
Amo16g0301 280 SFLD Haloacid Dehalogenase 68 262 - -
Amo16g0301 280 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 67 78 IPR006439 -
Amo16g0301 280 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 175 188 IPR006439 -
Amo16g0301 280 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 205 221 IPR006439 -
Amo16g0301 280 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 223 243 IPR006439 -
Amo16g0301 280 TIGRFAM HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 157 258 IPR006439 -
Amo16g0301 280 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE (HAD) SUPERFAMILY PROTEIN 19 280 - -
Amo16g0301 280 Gene3D - 72 264 IPR023214 -
Amo16g0301 280 CDD HAD_dREG-2_like 168 279 - -
Amo16g0301 280 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 68 262 - -
Amo16g0301 280 PANTHER - 19 280 - -
Amo16g0301 280 SUPERFAMILY HAD-like 68 271 IPR036412 -
Amo16g0301 280 TIGRFAM HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 176 256 IPR006439 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0301 Amo-Chr16 4611858 4614234 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0301 - - adu:107492671 569.311