Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0297 ATGAAGCTCATCAACATCAATCCCAAGAACCTCAAGCTTTCCCCTAAGCGTCTTTTCCGTTCCTCCAAGAAGGACCGTTCCGCTCCCTCCAGATCCGATCCTCCCTCATTCGGATCCTCCGCGTCCTCCTCCGAGGGCTCCACTCACAAGTCCGCCGCCGCCGCTGGTTCCGCCACGCCTACTAGTGTCCTCCCTGATGCTTCTGGCGACTGGTCCATCGAGCTCCACCTCGAGCTCTCACAGGCCTTCCGCCTCATCGACCGCGACGGCGACGGCGTCGTCTCACGCCAGGAGCTTGAGGCGGTTCTGAAGAGCTTGGCGCCGCTGCGATCGGAGGAAGTGGCGGCGATGCTGCGTGAGGTCGACGCTGAGGGCCGTGGATGCATCAGCGTCGAGGAGCTGGTGAGTCGAGTCGGTTCCGTTGGCGATGTTCCCATGACGGAAGAGGATGAGCTGAGGGAAGCATTCGAGGTGTTTGACAGCGACGGCGACGGGCGGATCTCGGCAGAGGAGCTGCTTAGGGTTTTCCAAGCGATCGGCGACGAGCGGTGCACGTTAGAGGAGTGCAGGCGCATGATAGAGGGCGTGGATAGGAACCGGGATGGGTTTGTGTGCTTCGAGGACTTTTCTCGTATGATGGAGTTGCAGCAACAGCAACGGTGA 663 0.6063 MKLININPKNLKLSPKRLFRSSKKDRSAPSRSDPPSFGSSASSSEGSTHKSAAAAGSATPTSVLPDASGDWSIELHLELSQAFRLIDRDGDGVVSRQELEAVLKSLAPLRSEEVAAMLREVDAEGRGCISVEELVSRVGSVGDVPMTEEDELREAFEVFDSDGDGRISAEELLRVFQAIGDERCTLEECRRMIEGVDRNRDGFVCFEDFSRMMELQQQQR* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0297 220 MobiDBLite consensus disorder prediction 32 63 - -
Amo16g0297 220 ProSiteProfiles EF-hand calcium-binding domain profile. 74 109 IPR002048 GO:0005509
Amo16g0297 220 ProSiteProfiles EF-hand calcium-binding domain profile. 147 182 IPR002048 GO:0005509
Amo16g0297 220 CDD EFh 151 213 IPR002048 GO:0005509
Amo16g0297 220 ProSitePatterns EF-hand calcium-binding domain. 160 172 IPR018247 -
Amo16g0297 220 PANTHER CALCIUM-BINDING PROTEIN CML35-RELATED 9 216 - -
Amo16g0297 220 ProSitePatterns EF-hand calcium-binding domain. 197 209 IPR018247 -
Amo16g0297 220 SMART efh_1 151 179 IPR002048 GO:0005509
Amo16g0297 220 SMART efh_1 188 216 IPR002048 GO:0005509
Amo16g0297 220 SMART efh_1 78 106 IPR002048 GO:0005509
Amo16g0297 220 SMART efh_1 113 141 IPR002048 GO:0005509
Amo16g0297 220 MobiDBLite consensus disorder prediction 1 63 - -
Amo16g0297 220 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 9 216 - -
Amo16g0297 220 ProSiteProfiles EF-hand calcium-binding domain profile. 184 219 IPR002048 GO:0005509
Amo16g0297 220 Gene3D - 68 139 - -
Amo16g0297 220 Gene3D - 143 220 - -
Amo16g0297 220 Pfam EF-hand domain pair 150 213 IPR002048 GO:0005509
Amo16g0297 220 Pfam EF-hand domain pair 79 135 IPR002048 GO:0005509
Amo16g0297 220 ProSitePatterns EF-hand calcium-binding domain. 87 99 IPR018247 -
Amo16g0297 220 SUPERFAMILY EF-hand 72 214 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0297 Amo-Chr16 4512118 4512780 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0297 12 213 EF-hand Containing Proteins AT2G41410 53.431 5.19e-60 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0297 K13448 - gmx:100815559 238.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0297 16 4512118 4512780 Amo16g0297 16 4512118 4512780 ECH