Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0277 ATGGCATTTCTAACTCGCCTCCATTCCTTCGCAAGGCCCTTCTCCTCTCTCCTCTCCACCTCGCGCCAGAGTGGAGGTAGAGCAATAATGACCAAGATTGGCATGAACATGTGCTCGCTTTCTCCAGCTGTTTCAACTGAAGCCTCAGATTTAGAATTTGAAGTGATCCATGATGATGTCAAAGCAACAGAAAAAGATGATGCACTTCGCTTGGCTGTCTCACAGCTTGCTAATGAGTTTAGTGAGGAATCCATGTTATCTTTGCAGAAGTTTTTCGGTGTGCGCCGCGCTCAAGTGATATCTACGGGCTCCTTGAAGCTTGACATAGCTCTTGGAATGGGAGGATTGCCAAAGGGTAGGATTGTTGAAATTTATGGACGAGAAGCAGCTGGCAAGACAACACTTGCACTTCAAGTTATTAAAGAAGCTCAAAAGCATGGAGGATATTGTGCATATCTTGATGTAGAGAATGCATTGGATGCTTCACTTGTGGAATCAATAGGTGTGAATACCGAAAAACTTCTTGTCTCGCATCCAGATTGTGCTGAAAATGTGTTGAGCATGGTTGATACATTAACGAAAAGTCGAGCTGTAGATGTGATTGTGATTGATAGTGTTGCTGCCCTTCTACCCAAGCGTGAACTTGATCAGTTAGGTGTTAGCACCAAACTAGATTTACAACCCCGACTGATGACCCAAGCACTGCGGAAAATTCAGTATTCATTATCACATTCACAAACTCTTATCATTTTTGTTAATCAGATTAGATTTAGTCCAAAATCAGCTAAGGGATGTGGACCTGCAGAAGAGGTAACTTGTGGTGGAAATGCTTTGAGATTCTATGCTGCTGTTCGATTGAGACTTTCGAGAATGGGATTGATCAAAACTGATGATAAGGTGGAGGGTCTTCGGGTCTGTGTGCAAGTGGCGAAAAATAAGCTAGCACCAGCAGCACTCAAAAAGGCCGAACTAGGCATCAAGTTTGGAGGAGGCTTTTGCCAAGAAGCAGAGGTCTTAGATTTGGCTTGTGAACATGGAATGATTGTAAAAGACGAGGAAAGCTACCTTATAGAAGGAAATACTTTCGATACTAGAAAAGCGGCCGAAGTGTATTTGGCAGAGGATGACAGCGTCTTTGACAAGTTGGTAAGGGACTTGAGAAGGCTATATTTTTGA 1176 0.432 MAFLTRLHSFARPFSSLLSTSRQSGGRAIMTKIGMNMCSLSPAVSTEASDLEFEVIHDDVKATEKDDALRLAVSQLANEFSEESMLSLQKFFGVRRAQVISTGSLKLDIALGMGGLPKGRIVEIYGREAAGKTTLALQVIKEAQKHGGYCAYLDVENALDASLVESIGVNTEKLLVSHPDCAENVLSMVDTLTKSRAVDVIVIDSVAALLPKRELDQLGVSTKLDLQPRLMTQALRKIQYSLSHSQTLIIFVNQIRFSPKSAKGCGPAEEVTCGGNALRFYAAVRLRLSRMGLIKTDDKVEGLRVCVQVAKNKLAPAALKKAELGIKFGGGFCQEAEVLDLACEHGMIVKDEESYLIEGNTFDTRKAAEVYLAEDDSVFDKLVRDLRRLYF* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0277 391 ProSiteProfiles RecA family profile 1. 96 255 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Amo16g0277 391 Pfam recA bacterial DNA recombination protein 68 332 IPR013765 GO:0003697|GO:0005524|GO:0006281
Amo16g0277 391 Gene3D - 95 387 IPR027417 -
Amo16g0277 391 PRINTS RecA protein signature 226 255 IPR013765 GO:0003697|GO:0005524|GO:0006281
Amo16g0277 391 PRINTS RecA protein signature 274 302 IPR013765 GO:0003697|GO:0005524|GO:0006281
Amo16g0277 391 PRINTS RecA protein signature 154 183 IPR013765 GO:0003697|GO:0005524|GO:0006281
Amo16g0277 391 PRINTS RecA protein signature 188 217 IPR013765 GO:0003697|GO:0005524|GO:0006281
Amo16g0277 391 PRINTS RecA protein signature 308 337 IPR013765 GO:0003697|GO:0005524|GO:0006281
Amo16g0277 391 PANTHER RECA 19 391 IPR013765 GO:0003697|GO:0005524|GO:0006281
Amo16g0277 391 ProSitePatterns recA signature. 277 285 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Amo16g0277 391 ProSiteProfiles RecA family profile 2. 266 337 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Amo16g0277 391 SMART AAA_5 118 292 IPR003593 -
Amo16g0277 391 PANTHER DNA REPAIR PROTEIN RECA HOMOLOG 2, MITOCHONDRIAL 19 391 - -
Amo16g0277 391 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 87 319 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0277 Amo-Chr16 4221117 4224166 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0277 - - aip:107645515 717.613
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0277 16 4221117 4224166 Amo16g0277 16 4221117 4224166 ECH