Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0252 ATGTCTGATGCGTTTTGCTCCGACTGCAAGCGGCAGACGGAGGTGGTTTTCGACCACTCCGCCGGCGACACCGTCTGCTCCGAGTGCGGTCTCGTTCTCGAGTCCCACTCCATTGACGAGACCTCGGAGTGGAGGACCTTTGCTAACGAGTCCGGGGATAACGATCCGGTTCGTGTCGGCGGGCCCACTAACCCGCTCCTTGCCGACGGTGGCCTTAGCACTGTCATCGCCAAGCCCAACGGCGCCAGCGGCGAGTTGTTCTCGTCTTCCCTTGGCCGCTGGCAGAACCGTGGCTCTAATCCTGATCGCGGTCTCATCCTCGCTTTCAAGACAATCGCCACTATGTCCGATAGGTTGGGACTCGTCGCAACCATCAAGGATCGAGCTAATGAGATATACAAGCGGGTTGAAGATCAGAAGTCTAGTAGAGGAAGAAATCAGGATGCATTATTGGCTGCTTGCCTCTACATTGCTTGTAGACAGGAGGACAAGCCACGCACTGTAAAGGAAATTTGCTCTGTTGCCAATGGAGCGTCAAAGAAGGAAATTGGCCGAGCAAAAGAATACATAGTGAAACAACTGGGTTTGGAGAAAGGTCAATCTGTGGAGATGGGAACAATACATGCTGGTGACTTTATGAGGCGATTTTGTTCTAATCTTGGTATGAATAATCAAGCTGTCAAAGCTGCTCAAGAAGCTGTTCAGAGATCAGAAGAGTTTGATATACGGCGGAGTCCCATATCAATTGCTGCAGCAGTGATATACATCATAACTCAGCTGTCAGATGATAAAAAAGCTCTCAAAGAAATATCATTAGCCACAGGAGTTGCAGAAGGAACCATTAGGAACTCGTACAAGGATCTTTATCCTCATGTTTCAAAAATAATACCAAACTGGTATGCAAAGGAGGAAGATTTGAAGAACCTTTGCAGCCCTTGA 939 0.4899 MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGELFSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGASKKEIGRAKEYIVKQLGLEKGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQRSEEFDIRRSPISIAAAVIYIITQLSDDKKALKEISLATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0252 312 Pfam Transcription factor TFIIB repeat 103 185 IPR013150 GO:0017025
Amo16g0252 312 Pfam Transcription factor TFIIB repeat 204 290 IPR013150 GO:0017025
Amo16g0252 312 SUPERFAMILY Cyclin-like 105 196 IPR036915 -
Amo16g0252 312 Pfam TFIIB zinc-binding 6 47 IPR013137 -
Amo16g0252 312 CDD CYCLIN 104 185 IPR013763 -
Amo16g0252 312 PRINTS Transcription initiation factor IIB signature 19 39 IPR000812 GO:0006352|GO:0070897
Amo16g0252 312 PRINTS Transcription initiation factor IIB signature 41 54 IPR000812 GO:0006352|GO:0070897
Amo16g0252 312 PRINTS Transcription initiation factor IIB signature 55 76 IPR000812 GO:0006352|GO:0070897
Amo16g0252 312 PRINTS Transcription initiation factor IIB signature 152 171 IPR000812 GO:0006352|GO:0070897
Amo16g0252 312 PRINTS Transcription initiation factor IIB signature 179 194 IPR000812 GO:0006352|GO:0070897
Amo16g0252 312 PRINTS Transcription initiation factor IIB signature 212 230 IPR000812 GO:0006352|GO:0070897
Amo16g0252 312 PRINTS Transcription initiation factor IIB signature 244 260 IPR000812 GO:0006352|GO:0070897
Amo16g0252 312 PRINTS Transcription initiation factor IIB signature 276 290 IPR000812 GO:0006352|GO:0070897
Amo16g0252 312 SUPERFAMILY Zinc beta-ribbon 4 50 - -
Amo16g0252 312 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 3 312 - -
Amo16g0252 312 ProSitePatterns Transcription factor TFIIB repeat signature. 144 159 IPR023486 -
Amo16g0252 312 Gene3D - 5 193 - -
Amo16g0252 312 Gene3D - 208 311 - -
Amo16g0252 312 SMART cyclin_7 110 192 IPR013763 -
Amo16g0252 312 SMART cyclin_7 211 290 IPR013763 -
Amo16g0252 312 CDD CYCLIN 207 289 IPR013763 -
Amo16g0252 312 ProSiteProfiles Zinc finger TFIIB-type profile. 2 34 IPR013137 -
Amo16g0252 312 SUPERFAMILY Cyclin-like 207 308 IPR036915 -
Amo16g0252 312 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 3 312 IPR000812 GO:0006352|GO:0070897
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0252 K03124 - fve:101305780 612.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0252 16 3809778 3815040 Amo16g0252 16 3809778 3815040 ECH