Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0207 ATGAATAGATATCTTCTTCTCTTTTCATTCTTTGTTAGTAGCATAGTAGTTCCTTTTGTTGGTTGTTATAATGCAAAATTACAAAAGGGCCCACTTGTTGAGAGTACAAATGTTGAAGATGATTATAATATTAATGATAGATCATGGTGGAGATTCAAGGGGTTAGTCATGCAAAGCAAAGATGTTGTTGGTGGCGATCGGACTTCTTCTTCTTCTTCTTCACATTTGCGTAAAGTTATTAATGTAAATGATTATGGAGCTTGTGGTGATGGAGGGGATGCTTCTTCTAATACACAGGCGTTTGAGAAGGCATGGCAAACAGCATGTTCTAGTGGCAAAACAATTCTTTTGGTACCTAAAGGAAATATTTACCAACTCAAACCAATCAGATTCTCTGGTCCTTGCAAATCTGACATCCAAGTCCAGATTGAAGGAACAATTGAAGCAACAGATGAGGCATCAGATTATTATAGCAATGATAGCAAATACTGGCTTGTATTTGATAATGTTAAGAAACTATTAGTCCATGGTGGTGGAACCATTGATGGAAATGGCAAAATATGGTGGCAAAAATCGTGTAAAAGGGACAAAACCTTGCCATGCAAGGATGCCCCTACGGCTTTGACATTCTCAAATTGCAGTAATTTGAGGGTTGAGAATTTGTATATATCAAATGCCCAACAAATGCATGTTAGAATTCAAGGTTGCAAAAATGTTATAGCTTCTGGGATTAATGTGACGGCACCAGGGGATAGCCCTAACACTGATGGAATTCATGTCACTAATAGTCACAACGTCCAAATCTCTGACTCCGTTATAGGAACTGGTGACGATTGTATATCAATTGTAAGTGGATCAAAAAATATTCTAGCTACAAATATAACGTGCGGACCTGGCCATGGTATCAGTATTGGAAGCTTGGGGAAGGGAAACTCCGAGGCATATGTTTCAGGAGTAACAGTGAAGCGAGCTCAGATTTCTGGAACTACAAATGGAGTTAGAATTAAGACATGGCAGGGAGGGTCAGGACTTGCTAGCTACATCCAGTTTAAACACATTGTGATGGAAAATGTGACCAATCCAATTTTGATAGACCAGAATTACTGTGACAAACCAAATAAGTCATGCCCAAAACAAAAATCAGCGGTTCAGATATCAAATGTGTTGTACCAAAACATATCAGGGACAAGTGCTTCAGATGTGGCTGTGAAGTTTGATTGTAGTGACTCAGTTCCATGCCAAGACATAATATTGGAGGACATTAACCTCCAAAGTTTTGAAGGAGACAAAGATGCTGAAGCTTTATGCAACAATGTAAAGTTGTCTTATTATGGAGACGTTAACCCTAGCTGCTGCTCATAG 1362 0.3877 MNRYLLLFSFFVSSIVVPFVGCYNAKLQKGPLVESTNVEDDYNINDRSWWRFKGLVMQSKDVVGGDRTSSSSSSHLRKVINVNDYGACGDGGDASSNTQAFEKAWQTACSSGKTILLVPKGNIYQLKPIRFSGPCKSDIQVQIEGTIEATDEASDYYSNDSKYWLVFDNVKKLLVHGGGTIDGNGKIWWQKSCKRDKTLPCKDAPTALTFSNCSNLRVENLYISNAQQMHVRIQGCKNVIASGINVTAPGDSPNTDGIHVTNSHNVQISDSVIGTGDDCISIVSGSKNILATNITCGPGHGISIGSLGKGNSEAYVSGVTVKRAQISGTTNGVRIKTWQGGSGLASYIQFKHIVMENVTNPILIDQNYCDKPNKSCPKQKSAVQISNVLYQNISGTSASDVAVKFDCSDSVPCQDIILEDINLQSFEGDKDAEALCNNVKLSYYGDVNPSCCS* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0207 453 ProSitePatterns Polygalacturonase active site. 293 306 IPR000743 GO:0004650|GO:0005975
Amo16g0207 453 PANTHER - 15 452 - -
Amo16g0207 453 SMART pbh1 236 262 IPR006626 -
Amo16g0207 453 SMART pbh1 316 337 IPR006626 -
Amo16g0207 453 SMART pbh1 285 306 IPR006626 -
Amo16g0207 453 SMART pbh1 263 284 IPR006626 -
Amo16g0207 453 SMART pbh1 345 366 IPR006626 -
Amo16g0207 453 Gene3D - 63 449 IPR012334 -
Amo16g0207 453 Pfam Glycosyl hydrolases family 28 114 440 IPR000743 GO:0004650|GO:0005975
Amo16g0207 453 SUPERFAMILY Pectin lyase-like 71 452 IPR011050 -
Amo16g0207 453 PANTHER ENDO POLYGALACTURONASE 15 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0207 Amo-Chr16 3063819 3069023 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0207 78 451 Glycoside Hydrolase AT3G07970 56.649 5.99e-147 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0207 K01184 - gmx:100817828 536.954