Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0175 ATGGCGAAGACACCAATCTTCTCCCTCTTCCAGACCATCTCATTTCTCCTCGTCATCCAATCACCTTTTGCCACGTCACACCCTCTAAACCCCCTCCCAATCATCCTCTCCGTCACTGACTTTGGAGCCTCCGGCGACGGCCTCAGCTACGACACCACAGCCATTCAGTCCACCATCGACGCCTGCCCCGATGGACGCCCCTGTCGCGTCACCTTCCCTGCGCCGGGAAAGTACCTGACTGCCACCGTGTTCCTGAAGTCCGGCGTAGTGCTGAACGTGGAGCCCGGCGCCACCGTGCTTGGAGGAACTAGGCTGGAGGACTACCCGGAGGACTCGTCGCGGTGGTACGTGATATTGGCGGAGAACGCATCGAACGTGGGGATCGAAGGTGGCGGAGCGGTGGACGGACAGGCGGGGAAATTCGTCGTGAGGGAGGATCCGAGGAAGAACGTAATGGTGAGCTGGAACCAGACAGGAGCGTGCTCCGGCGACGAGTGCCGGCCTCGGTTGATCGGTTTTGTTGATTGCAACCACGTTAGGGTTTCCAACATTTCCCTCAACCACCCTGCTTATTGGTGCTTGCACATGGTACGAAGTAACAACATAAGAATTGAAGATGTTGGAATTTACGGAGACTTCAATATTCCAAACAACGATGGCATTGACATAGATGACTCAAACAACACAATAATCAATAGATGCCACATTGATACAGGAGATGATGCAATATGTCCAAAGTCTTCCACTAGCCCCGTTTACAACCTCACTGCCACCAATTCTTGGATTCGAACCAAATCCTCTGCAATCAAACTTGGAAGTGCTAGTTGGTTTGATTTCAAGCACTTTGTCTTTGATAACATCACTATTGTAGATTCTCATAGAGGACTTGCCTTCCAGATTCGTGATGGAGGAAATGTAAGCGACATTGTATTCTCAAACATAAACATCAGCACAAGATACTATGATCCATTATGGTGGGGGAGAGCAGAACCTATCTATGTCACTACTTGTCCTCGTAGTGCAACCTCAAAGGAGGGTTCAATCTCAAACATACTCTTCATTAACATCACTGCAAATGCTGAAAATGGCATCTTTTTATCCGGGTCAAAGAGAGGGTTGTTAAGGAATTTGAGATTCATCAACATGAATGTCACCTATAGAAGGTTCACAAGTTATGAAGGTGGGTTGTGGGACTATAGGCCAGGGTGCCAAGAATTAGTGAAACACAACACTGCTGGAATGATGATGGAACACATTGATGGTCTTGAGGTTAATAATGTAGAAATGAGATGGTCAAATGAACAAGAACAACTTGATCAGTGGAATAATCCTTTGGAGTTTAGGCCTTCTACTGTGAATAATGTCAGTTTTATTCATTTTAATTCTGGTTTCTACACAAATAGCAAATCAAGTTCATGA 1419 0.4708 MAKTPIFSLFQTISFLLVIQSPFATSHPLNPLPIILSVTDFGASGDGLSYDTTAIQSTIDACPDGRPCRVTFPAPGKYLTATVFLKSGVVLNVEPGATVLGGTRLEDYPEDSSRWYVILAENASNVGIEGGGAVDGQAGKFVVREDPRKNVMVSWNQTGACSGDECRPRLIGFVDCNHVRVSNISLNHPAYWCLHMVRSNNIRIEDVGIYGDFNIPNNDGIDIDDSNNTIINRCHIDTGDDAICPKSSTSPVYNLTATNSWIRTKSSAIKLGSASWFDFKHFVFDNITIVDSHRGLAFQIRDGGNVSDIVFSNINISTRYYDPLWWGRAEPIYVTTCPRSATSKEGSISNILFINITANAENGIFLSGSKRGLLRNLRFINMNVTYRRFTSYEGGLWDYRPGCQELVKHNTAGMMMEHIDGLEVNNVEMRWSNEQEQLDQWNNPLEFRPSTVNNVSFIHFNSGFYTNSKSSS* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0175 472 Pfam Glycosyl hydrolases family 28 63 386 IPR000743 GO:0004650|GO:0005975
Amo16g0175 472 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 25 464 - -
Amo16g0175 472 SUPERFAMILY Pectin lyase-like 24 394 IPR011050 -
Amo16g0175 472 Gene3D - 26 394 IPR012334 -
Amo16g0175 472 PANTHER PECTIN LYASE-RELATED 25 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0175 Amo-Chr16 2367702 2370617 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0175 19 466 Glycoside Hydrolase AT3G57790 66.231 0.0 628
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0175 - - gmx:100794954 776.933