Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0089 ATGGAGGACGAAGAAGACCAGCAGAAGGTTTCAGATCTGGTGCGGGAACTCGTAATCCGCCTCCTCTCCTCCCCCGCCGACGACGGCTCCGCCACCACCAACTCCAAGCCCAACCTTAACTCCCCTCAGTTCGTCAACTCCCTCCGCTACGCCCAACGCATCCTCTGCAGCCGCCTCACCCCCTCCGTCGCCCCCGACGCCGCTGCCATCGCTGACTCCGTCAAGCGTCGCCTCGCCTCCCACGGAAGCTCCTCCCTCGCTCTCTCCTTCGCCGACCTCTTCGCCAAGTTCTCCTCCAAGACCGGCCCTGGCAGCGTCAACAACAAGTGGGCCGTCATCTACCTCCTCAAGATCATCTCCGAGGATCGCAAGGGTGCGAAGTCCCAGTATTGCCCTTCTAACCTCTTGCCCAATTTGTCCCTCTCCGACGACGCCGATTTTGGTAAGGGTAAGGGTTCTTCTTCTGTTAAGCCTTTGGGGGATAATAACAAAAAGGGATGGGATAACGGGGTTCTATTGGTTTCAAAGGATCCCGAGAATAGGCGCGAGCTTGCGTTTAGAGAATTTGTCAATTTGGTTAGGGAAGAGAATGAGGTTTCTGAAGAGGTTTTGGTTAGGGATGTGTTGTATGCTTGCCAAGGGGTTGATGGGAAGTATGTTAAATTCGATGGTGGTAGTGATGACGCTGGGTATGTGTTATCAGATTCGATTAGCGTCCCTAGAGCTACTAGAATTATGGTTCGTAAGCTTTGTGAATTGGGCAGGTTGTTTAGGAAGGTTACTGGGTATATTGCGCAGAGTATGGATCGGTTTCCGGCCGAAGACGTAAGTACTGTTGGGCAGGCTTTGTGTTCTGCATTGCAGGATGAGCTTACTGAGTATTATAAGTTGCTAGCTGTGCTTGAGGCGCAGTCTTCGAATCCAATTCCTTTGGTATCCGAAACTGCTAGCTCGGGAAATTATCTTTCAYTGAGGAGGTTGGCTGTTTGGATTGCAGAACCAATGGTGAAGATGAGGTTGATGGCTGATTTGGTTGACAAGTGCAGGGTTCTGAAGGGCGGTGCAATGGCCAGTGCAATTCATTTGCATGCCCGACATGGCGATCCTCTGGTTCATGAGTTCATGAGGAGGTTGCTGCAGAGAGTGTGTGCACCTCTGTTTGAGATGGTGAAAAGGTGGGTTCAGGAAGGGGAGTTGGAGGATATATTTGCAGAGTTTTTTATTGTGGGGCAAGAGGTGAAAGCTGAGTCTCTTTGGCGTGAAGGTTATAGGCTCAACCACTCGATGCTTCCTTCATTCATTTCACCCTCGCTTGCACAGCGTATTTTGAGGACTGGGAAGTCCATCAATTTCCTTCGGGTGTGCTGTGATGATCGCAGTTGGGCTGATGCAGCAACCAGAGTTGCCACTGATATAGGGGTGACAGCAAGAAGAGGGGGTTTTGGGTACGGTGAAACTGATACCCTTGCTTCACTAGTTGATGAAGCTGCAAAGAGAATTGATAAGCATCTGTTGGATGTAATTTACAGACGGTACAAATTCAAAGAACACTGCCTTGCAATTAAGCGGTATTTATTGCTTGGTCAAGGTGATTTTGTGCAATATCTAATGGACATTGTTGGGCCTGATCTTTCTGAGCCAGCAAACACGATAAGCTCTTTCAAACTCTCTGGACTGTTGGAAACTGCAGTTCGGGCATCCAATGCTCAGTATGATGATCGTGACATGTTGGATAGGCTCAGGGTCAAAATGATGCCGCATGAAAGCGGTGACAGGGGCTGGGATGTATTTTCACTGGAATATGATGCAAGAGTTCCGTTGGACACTGTGTTCACGGAGTCTGTGATGGCAAAGTATTTAAGAATTTTTAACTTTTTGTGGAAGCTTAGAAGAGTTGAACATGCACTTACTGGTGCCTGGAAGACCATGAAACCAAACTGCATCAGTTATCATTCCTTTACCAGATTGCAAAGTGCAGTAAAGAAGGAGTTGGATTCAACATTGAGGCGCTGCCAGGTTCTATGGGTTGAAATTAATCACTTCATTTCAAATTTGCAATATTATATAATGTTCGAAGTCTTGGAAGTATCATGGTCAAACTTCTTAAGTGAGATGGATGTAGCCAAGGATCTTGATGATCTACTTGCAGCTCATGACACATATCTAGATTCCATTGTAGAGAAATCCCTTCTTGGTGAGCTCTCCCAATCGCTTTACAAGTCATTATTAGTGATATTTGACCTTATACTACGTTTTCGGAGCCATGCGGATCGGCTGTATGAAGGTATTCAGGAGTTGCAAGCAAGAATCACAAGATCTTCCCAATCCTCTTCTGAACAAGGATCCTGGACTGCTGATGGAAGGAAAGCCCTAACACAACGTGCTGGCGAATTTCTTCGAAATATGGGACATGATCTGGAGGAGATTKCAAARGAGTATTCGTCATTGCAAGAGGAATTCATATCTCAGTTCCCTGTACAGAAGCATGTTGATCTAAAGTTTCTCTTTTTCCGTCTCGATTTCAATGAATTTTATAGGCGGGTGTCTCCTAGCTCATAA 2559 0.4701 MEDEEDQQKVSDLVRELVIRLLSSPADDGSATTNSKPNLNSPQFVNSLRYAQRILCSRLTPSVAPDAAAIADSVKRRLASHGSSSLALSFADLFAKFSSKTGPGSVNNKWAVIYLLKIISEDRKGAKSQYCPSNLLPNLSLSDDADFGKGKGSSSVKPLGDNNKKGWDNGVLLVSKDPENRRELAFREFVNLVREENEVSEEVLVRDVLYACQGVDGKYVKFDGGSDDAGYVLSDSISVPRATRIMVRKLCELGRLFRKVTGYIAQSMDRFPAEDVSTVGQALCSALQDELTEYYKLLAVLEAQSSNPIPLVSETASSGNYLSLRRLAVWIAEPMVKMRLMADLVDKCRVLKGGAMASAIHLHARHGDPLVHEFMRRLLQRVCAPLFEMVKRWVQEGELEDIFAEFFIVGQEVKAESLWREGYRLNHSMLPSFISPSLAQRILRTGKSINFLRVCCDDRSWADAATRVATDIGVTARRGGFGYGETDTLASLVDEAAKRIDKHLLDVIYRRYKFKEHCLAIKRYLLLGQGDFVQYLMDIVGPDLSEPANTISSFKLSGLLETAVRASNAQYDDRDMLDRLRVKMMPHESGDRGWDVFSLEYDARVPLDTVFTESVMAKYLRIFNFLWKLRRVEHALTGAWKTMKPNCISYHSFTRLQSAVKKELDSTLRRCQVLWVEINHFISNLQYYIMFEVLEVSWSNFLSEMDVAKDLDDLLAAHDTYLDSIVEKSLLGELSQSLYKSLLVIFDLILRFRSHADRLYEGIQELQARITRSSQSSSEQGSWTADGRKALTQRAGEFLRNMGHDLEEIXKEYSSLQEEFISQFPVQKHVDLKFLFFRLDFNEFYRRVSPSS* 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0089 852 Pfam Gamma tubulin complex component N-terminal 205 508 IPR041470 -
Amo16g0089 852 PANTHER GAMMA TUBULIN COMPLEX PROTEIN 36 840 IPR007259 GO:0000226|GO:0000922|GO:0005815|GO:0007020|GO:0043015
Amo16g0089 852 Coils Coil 811 819 - -
Amo16g0089 852 PANTHER GAMMA-TUBULIN COMPLEX COMPONENT 36 840 - -
Amo16g0089 852 Gene3D - 515 844 IPR042241 -
Amo16g0089 852 Coils Coil 799 809 - -
Amo16g0089 852 Coils Coil 284 304 - -
Amo16g0089 852 Pfam Gamma tubulin complex component C-terminal 516 845 IPR040457 GO:0043015
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0089 Amo-Chr16 1191442 1195411 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0089 K16570 - gmx:100784710 1283.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0089 16 1191442 1195411 Amo16g0089 16 1191442 1195411 ECH