Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0058 ATGAAGCGAGTTTGGAGATTCACTTCAGACGCAGTAGCGCAAGCCGAACACTTCTGCTTCCACTCCCATGGAATCCCTAACCCTAAACCTAATATTCCGTCCTTTACTACCACCACTGCCGCATTCACATCGCCTGGCCTCACGCGCCGCCACTGCACCTCCGCTACCCCTCCTCCTCCTCACCCGCTCCAAGATATTACTCCCCTCTTCATCGAGAAACGCAGGCTTCCGTTCGGAGAGGATCTCATCAATAAAGCATCGGTTTTGAAGAACCAACTGGTTCTCGAAGCCTCGGATTCCAATCGGGTAATTGAGATCCTCGATGAGAACTCTGCATCACTGATTGAAAGTCATGTAGGTGGATCTGTGCTGCTCGAGCTCTTGAATCAGTTGGATTCGTGGCCTTCCTTGGCCCTTCAGGTGTTTGATTGGAGGAGGGAGAAGAAGAATTATGGTGTTGACTCCCCCATGAGTGTATATGAGTATTCTAAGGGCATAAAAGCTGCAGGTAGATGTAAAGATGTTCATCATGCCGTTGAGATCTTTCTAGATGCTGCAAAGAAGGGCATGAGAACGACCAGCACTTACAATGCATTGATGAGTGCTTTTATGTTCAATGGTCTTGCAAAGAATTGTCACGAGTTGTTCTGTGATATGAAGAAGCATGCAGCTTGTCCTCCTTCAATTGGCACATACAATATTCTCATATCTCTTTACTCTCGCTTGCTGTTGGTGGATCACATGGAAGAAACATACCAGGCAATAAAAGAGTCGGACCTCCAACCCAGTGAGAATACTTATAATTATTTGATTGCTGGATATATCTCGGCTTCGATGTGGCATGACATGGAGAGAGTTTTTCAAATGATGAACAGAGGCCCTGTCAAGCCTAACTTGAAAACCCACCTGCTAATGCTTCGAGGCTATGGACAATCAGGTAATCTGGAGAAGATGGAAGAGATGTATTCTCTAGTAAGGGATCATGTAAACAAAAAAGAAATTCCATTGATCAGGGCCATGATATGTGCGTATTGTAAAAGTTCAGATTCGGATAGAGTGAAGAAGGTAGAGGGATTGTTGAAGCTTATTCCACAAAAACATTACAGACCATGGTTGAACGCCTTGTTGATTAAGCTCTATTCCCAGGAGGACTGGTTAGAGGAAATGGAGATTGCAATTAATGAGGCTTTTGAGCGCAGAACCCGGATAGCCTCAGCAAGTATTATGAGATGCGTTACTGCAACTTATTATCGGTGTAATGCAATAGAAAGGCTAGAAACTTTTGTGAAACGTGCTGAATGTGCTGGGTGGAGAATCTGTCGGTCCTTGTATCATTGTAAGCTTGTCTTATATGGATCACATAATCGTATTGATGAGATGCGTTATGTCTTTGATGAAATGGAAGGTGTTAAAATTAATTGCACAAAAAAAACATTGTGGATAATGTACAAAGCTTACCTGAACCATGGTCAGAGATCCATGGTTCTGAAAATATTGGGACAAATGTTCAAGCATGGTTATGAAGTCCCCTTGCATGCATTTCCATCATAA 1551 0.4346 MKRVWRFTSDAVAQAEHFCFHSHGIPNPKPNIPSFTTTTAAFTSPGLTRRHCTSATPPPPHPLQDITPLFIEKRRLPFGEDLINKASVLKNQLVLEASDSNRVIEILDENSASLIESHVGGSVLLELLNQLDSWPSLALQVFDWRREKKNYGVDSPMSVYEYSKGIKAAGRCKDVHHAVEIFLDAAKKGMRTTSTYNALMSAFMFNGLAKNCHELFCDMKKHAACPPSIGTYNILISLYSRLLLVDHMEETYQAIKESDLQPSENTYNYLIAGYISASMWHDMERVFQMMNRGPVKPNLKTHLLMLRGYGQSGNLEKMEEMYSLVRDHVNKKEIPLIRAMICAYCKSSDSDRVKKVEGLLKLIPQKHYRPWLNALLIKLYSQEDWLEEMEIAINEAFERRTRIASASIMRCVTATYYRCNAIERLETFVKRAECAGWRICRSLYHCKLVLYGSHNRIDEMRYVFDEMEGVKINCTKKTLWIMYKAYLNHGQRSMVLKILGQMFKHGYEVPLHAFPS* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0058 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 192 226 IPR002885 -
Amo16g0058 516 Gene3D Tetratricopeptide repeat domain 243 332 IPR011990 GO:0005515
Amo16g0058 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 263 297 IPR002885 -
Amo16g0058 516 TIGRFAM PPR: pentatricopeptide repeat domain 231 263 IPR002885 -
Amo16g0058 516 TIGRFAM PPR: pentatricopeptide repeat domain 266 298 IPR002885 -
Amo16g0058 516 Pfam Pentatricopeptide repeat domain 255 310 IPR002885 -
Amo16g0058 516 Gene3D Tetratricopeptide repeat domain 376 514 IPR011990 GO:0005515
Amo16g0058 516 Gene3D Tetratricopeptide repeat domain 86 225 IPR011990 GO:0005515
Amo16g0058 516 PANTHER EXPRESSED PROTEIN 1 515 IPR044179 GO:0003729
Amo16g0058 516 PANTHER OS05G0407900 PROTEIN 1 515 - -
Amo16g0058 516 Pfam PPR repeat family 192 237 IPR002885 -
Amo16g0058 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 228 262 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0058 Amo-Chr16 819470 822520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0058 157 388 Miscellaneous Gene Families AT4G11690 21.951 4.53e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0058 - - gmx:100816768 608.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0058 16 819470 822520 Amo16g0058 16 819470 822520 ECH
Amo16g0058 16 819470 822520 Amo06g0439 06 6256945 6259949 hybridization