Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0030 ATGCATTCGGGCTTGGGCGGGGCCTCGGGGGGCAATTATGGAATAACAGAAAATCTTCATATATACGTATACGTTTACATCAACTTGAGTGCTTGGTTCCCATTTTCTACTGCACTCTCTTCCTTTGTTCTCAAAATGTTGTTCTTCTCGTACTTCAAGGATTTGGTGGGAAGAGAAGTAACGGTGGAGCTCAAGAACGATTTGGCCATAAGGGGCACTCTTCACTCCGTTGACCAGTACCTCAACATCAAGCTCGAGAACACTCGCGTCGTTGACCAAGACAAGTACCCCCATATGCTTTCTGTGAGGAACTGCTTCATCAGAGGTTCAGTGGTCAGATACGTGCAATTACCTCCAGAAGGCGTGGACGTTGAACTATTGCACGATGCCACTAGGAGAGAAGCTCGGGGTGGTTAA 417 0.4748 MHSGLGGASGGNYGITENLHIYVYVYINLSAWFPFSTALSSFVLKMLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPEGVDVELLHDATRREARGG* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0030 138 PANTHER SNRNP CORE PROTEIN FAMILY MEMBER 46 136 IPR016654 GO:0006397
Amo16g0030 138 SMART Sm3 50 117 IPR001163 -
Amo16g0030 138 CDD LSm2 47 135 IPR016654 GO:0006397
Amo16g0030 138 Pfam LSM domain 52 116 IPR001163 -
Amo16g0030 138 Gene3D - 39 137 - -
Amo16g0030 138 SUPERFAMILY Sm-like ribonucleoproteins 48 137 IPR010920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0030 Amo-Chr16 526627 529862 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0030 K12621 - vvi:104879775 193.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0030 16 526627 529862 Amo16g0030 16 526627 529862 ECH