Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0028 ATGGCGAATCTGGTGCATTCATTCACACTGATTCCTTGCAACCCATATAAATACCGAACCAAAGTTTCATTCTTTCACAAATCCTTTAACCAGACAAAGGACCAATTCGTTATTCGAGGGTTGCAAAACCCCATTCAACCCTTTTCGCGTAATTTCACCTCAAAATTGGGTGCCACGTCAAGGTTATCCGTTGAGCATAAACTGAATGCCGTAGCTTCCGAATCTGAGGATCTGAAGAGGACGTTGAGCTATTTGTTCAGGACAGAGATTGGTGGCGGTTTGGTTAGAGTTTATGTCACAAAGAGTAATAACCACCTTAGGTATTCTGTTTTGATTGAGGTTTCTTCGTTGGATTTAAGGGTTAGTGGCCAAGGTGAAAAGAGGCTTGTGTTGTGTTGGGGTGTGTATAGAGACGATTCGTCGTGTTTTGTGGAGTTGGATTCGAAGAATTCGGGTGGGGATGCTGGGGCGGGGATGAATCTAAGCCAGTTTAAGCAGAATTCTGCTGAGAAGTTTGTGGTTGAGTTGGATTTTGATGCTAAGCAAGTTCCATTGTACTTATCATTTTATTTTAAGTCTCTGTTAGGTGATGATGAGACTAGTGGATTGGAGATCAGAAGCCATAGGAGAACAAATTTTTGTGTTCCTGTCGGTTCTCTTCCAGGATACCCAGCTCCTCTAGGTCTGTCTTTTAGTCCTGATGGTTCTATGAACTTTGCCCTTTTCTCAAGGCATGCAGAGGGTGTTGTTTTGTGTTTGTATGATGACACTGGTGTGGAGAAACCTGCCTTGGAGCTTGATCTGGATCCTTATGTCAATCGATCAGGTGATGTTTGGCATGTCGCATTTGAGAGTGCCTGGACTTTTGTGAGCTATGGTTATCGCTGCAGGGGGGATCTTGTGGGGAGAGACAAGGATGATGATGATGCCATGCGTGTTCTTTTGGACCCTTATGCTAAGATCATTGGGAATTTTTTTCCTGATGGTCATGGATTAGTGAGGAATCTTGGACAGTTGGGGAAGGAGCCTGCTTTCGACTGGGGTGATGATTACCGTCCGAATTTGTCCATGGAAAAGCTAGTGGTCTATAGGTTGAATGTCAAGTGCTTTACGCAGGATATGTCCAGTCAACTTCCTAGTAATTTAGCCGGGACCTTTTCTGGTTTGGCTAACAAGGTGAAGTATCTCAAAGATCTGGGTGTGAATGCCATTTTGCTGGAGCCAGTTCTCACATTTGATGAGAATAAAGGACCATATTTTCCTTGTCACTTTTTCTCTTTAATGCACATATATGGGCCATCTGGTGATCCTGTGTCCACTATCAATTCTATGAAGGAGATGGTTAAAACTATGCATGCCAATGGTATAGAAGTTCTTATGGAAGTTGTGTTTGCCCATACTGCTGAGGCTGGTGCTCTGCAAGGAATCGATGACTTATCGTACTATTTTCTAAATGGATTTGATGATCCGGATACACAGGGTGCTTTGAAATGTAACTATCCTGTAGTGCAAAGTTTGATTCTGGATAGCCTTCGTCATTGGGTGACTGAGTTTCACATTGATGGCTTCTCTTTCATAAATGCTTCTAATCTGTTGAGGGGTTCTCATGGGGAATACTTGTCTCGACCTCCATTGGTTGAAGCAATCGCTTTTGATCCAGTACTCTGGAAGACTAAAATCATTGCAGATTCCTGGGATCCCCATGGTATGGTAGCAAAGGGAACCCACTTTCCCCATTGGATGAGATGGGCTGAAATAAATACAAAATTTTGTCATGATGTGAGAAACTTCTTGAGGGGTGAAAGTCTTATCAGTAACCTCGCAACAAGACTTTGTGGGAGTGGAGACATGTTTTCTGATGGACGAGGCCCGGCATTTGCTTTCAATTATGTTGCCAGGAATTTTGGACTTTCTCTTTTGGACTTGGTCAGCTTTAGTAGTGGTGAACTAGGTGCAGAGTTGAGTTGGAATTGTGGAGAAGAAGGACCTACTAACAACGTCGTTGTGCTTGAAAGACGACTCAAACAAATCCGTAATTTCCTCTTCATCTTGTTTGTGTCCTTAGGAGTACCTGTTCTGAACATGGGAGATGAGTGTGGTCAGTCTTTTGATGGTTCTCCTGCATACAGTGTCTTTAAACCTTTCAATTGGAGTGCCTTGCAAACAGGTTTTAGCAAACAAACAACACAATTTGTTTCCTTTTTAAGTTCACTCAGAAAGAGGCGGAGTGATCTTCTTCAAAGTAGCAGCTTTTTAAAGGAAGAAAACATAGAGTGGTACGGAAGCAACCGGGATCCACCACAATGGGAAGACCCAACCTGCAAGTTCCTTGCAATGCTTCTGAAGGCAGAAAAAACAGAGCTCCCAGAAAACCCTTTACCTACTGACATATCAGGGGACTTATTTCTTGCTTTCAATGCAGCTGATAATTCAGAAACCTTAGTTCTACCTGTGCCCCCGGAAGGGATGTCGTGGTACCGTTTAGTCGATACGTCTCTTCCGTTTCCTGGTTTTTTCTTAACCGATGGTGAACTTGTCCCTGAGCAGACAGCAGGATTGTTTACTTACCTAATGAGGTCTCACAGCTGCACTTTATTTGAGACAAGCAATAAGAGAAGCTAA 2622 0.4314 MANLVHSFTLIPCNPYKYRTKVSFFHKSFNQTKDQFVIRGLQNPIQPFSRNFTSKLGATSRLSVEHKLNAVASESEDLKRTLSYLFRTEIGGGLVRVYVTKSNNHLRYSVLIEVSSLDLRVSGQGEKRLVLCWGVYRDDSSCFVELDSKNSGGDAGAGMNLSQFKQNSAEKFVVELDFDAKQVPLYLSFYFKSLLGDDETSGLEIRSHRRTNFCVPVGSLPGYPAPLGLSFSPDGSMNFALFSRHAEGVVLCLYDDTGVEKPALELDLDPYVNRSGDVWHVAFESAWTFVSYGYRCRGDLVGRDKDDDDAMRVLLDPYAKIIGNFFPDGHGLVRNLGQLGKEPAFDWGDDYRPNLSMEKLVVYRLNVKCFTQDMSSQLPSNLAGTFSGLANKVKYLKDLGVNAILLEPVLTFDENKGPYFPCHFFSLMHIYGPSGDPVSTINSMKEMVKTMHANGIEVLMEVVFAHTAEAGALQGIDDLSYYFLNGFDDPDTQGALKCNYPVVQSLILDSLRHWVTEFHIDGFSFINASNLLRGSHGEYLSRPPLVEAIAFDPVLWKTKIIADSWDPHGMVAKGTHFPHWMRWAEINTKFCHDVRNFLRGESLISNLATRLCGSGDMFSDGRGPAFAFNYVARNFGLSLLDLVSFSSGELGAELSWNCGEEGPTNNVVVLERRLKQIRNFLFILFVSLGVPVLNMGDECGQSFDGSPAYSVFKPFNWSALQTGFSKQTTQFVSFLSSLRKRRSDLLQSSSFLKEENIEWYGSNRDPPQWEDPTCKFLAMLLKAEKTELPENPLPTDISGDLFLAFNAADNSETLVLPVPPEGMSWYRLVDTSLPFPGFFLTDGELVPEQTAGLFTYLMRSHSCTLFETSNKRS* 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0028 873 Gene3D - 755 873 IPR013780 -
Amo16g0028 873 Gene3D Immunoglobulins 214 330 IPR013783 -
Amo16g0028 873 SMART aamy 368 742 IPR006047 GO:0005975
Amo16g0028 873 Gene3D Glycosidases 341 754 - -
Amo16g0028 873 PANTHER GLYCOGEN DEBRANCHING ENZYME 57 871 - -
Amo16g0028 873 SUPERFAMILY E set domains 221 353 IPR014756 -
Amo16g0028 873 CDD E_set_GDE_Isoamylase_N 226 364 IPR044505 -
Amo16g0028 873 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 226 319 IPR004193 GO:0004553|GO:0005975
Amo16g0028 873 SUPERFAMILY Glycosyl hydrolase domain 754 867 - -
Amo16g0028 873 PANTHER ISOAMYLASE 2, CHLOROPLASTIC 57 871 - -
Amo16g0028 873 Pfam Alpha amylase, catalytic domain 384 471 IPR006047 GO:0005975
Amo16g0028 873 SUPERFAMILY (Trans)glycosidases 343 745 IPR017853 -
Amo16g0028 873 CDD AmyAc_plant_IsoA 356 747 IPR044096 GO:0019156|GO:0019252
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0028 Amo-Chr16 510798 513998 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0028 19 870 Glycoside Hydrolase AT1G03310 54.186 0.0 932
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0028 K01214 - gmx:100777953 1236.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0028 16 510798 513998 Amo16g0028 16 510798 513998 ECH