Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g1161 ATGGCCATGGCAGTGCCGGTTTCTGCTATTGGTTTTGAAGGCTACGAAAAGAGGTTGGAAATATGCTTTTCCCACCCTGGACTCTTTTCTGACCCTGAAGGAAAGGGTCTAAGGTCTCTCACCAAGTCCCAGTTGGATGAGATTCTTGCTCCAGCTGAGTGCACCATTGTTTCTTCGCTTTCAAGCAACGACGTTGACTCCTATGTTCTTTCTGAGTCAAGCCTCTTCGTTTATCCCTACAAGATTATCATTAAAACTTGTGGTACTACTAAGTTATTGCTTTCAATCCCACCCATATTGCGGTTGGCTGAGACCCTTTCACTTAATGTCAAATCTGTGAGGTATACCCGAGGAAGTTTCATTTTTCCTGGTGCCCAGTCCTTCCCACACCGCAGCTTCTCCGAAGAAGTTGCCATTCTGGATAGCCATTTTGGGAAGCTTGGTTCAGGCAGCATGGCTTACATTATGGGCGGTGGCATAGACAAACCACAGAAATGGCATGTTTACTCTGCTTCTGCAGAATCTCCTTGCGGTTATTCAATGAATTCTGTCGAAGGTGCTGCTGTTTCTACAATTCATGTTACTCCAGAAGATGGTTTCAGCTATGCAAGCTTTGAAACAGTGGGATATGATTTGAAAATGGTCAATCTGAACGATCTAGTTGAGAGTGTGTTGGCATGCTTCCAACCTACTGAGTTTTCGTTAGCGGTTCATGTTGACTGTTCAAGCAAGTCATTTGAGCAGAGCTGTTTGCTGGATGTTAAGGGATACTGTCGTGAAGAGAGGAGCCACGAGGGGATTGGAATGGGTGGTTCTGTTGTCTATCAGAAGTTCGTCAAGACTTCTGATTGTGGTTCACCTAGATCAACTCTGAAGTGCTGGAAAGATGAAGAGGAAGAAGAGTAG 906 0.4503 MAMAVPVSAIGFEGYEKRLEICFSHPGLFSDPEGKGLRSLTKSQLDEILAPAECTIVSSLSSNDVDSYVLSESSLFVYPYKIIIKTCGTTKLLLSIPPILRLAETLSLNVKSVRYTRGSFIFPGAQSFPHRSFSEEVAILDSHFGKLGSGSMAYIMGGGIDKPQKWHVYSASAESPCGYSMNSVEGAAVSTIHVTPEDGFSYASFETVGYDLKMVNLNDLVESVLACFQPTEFSLAVHVDCSSKSFEQSCLLDVKGYCREERSHEGIGMGGSVVYQKFVKTSDCGSPRSTLKCWKDEEEEE* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g1161 301 Gene3D - 175 281 - -
Amo15g1161 301 Gene3D - 73 174 - -
Amo15g1161 301 Pfam Adenosylmethionine decarboxylase 175 278 IPR001985 GO:0004014|GO:0006597|GO:0008295
Amo15g1161 301 Pfam Adenosylmethionine decarboxylase 11 173 IPR001985 GO:0004014|GO:0006597|GO:0008295
Amo15g1161 301 Gene3D - 1 72 - -
Amo15g1161 301 PANTHER S-ADENOSYLMETHIONINE DECARBOXYLASE 3 174 IPR001985 GO:0004014|GO:0006597|GO:0008295
Amo15g1161 301 PANTHER S-ADENOSYLMETHIONINE DECARBOXYLASE 175 298 IPR001985 GO:0004014|GO:0006597|GO:0008295
Amo15g1161 301 PIRSF SAM_decarbox_euk 173 286 IPR001985 GO:0004014|GO:0006597|GO:0008295
Amo15g1161 301 PIRSF SAM_decarbox_euk 1 175 IPR001985 GO:0004014|GO:0006597|GO:0008295
Amo15g1161 301 ProSitePatterns S-adenosylmethionine decarboxylase signature. 67 77 IPR018166 GO:0004014
Amo15g1161 301 SUPERFAMILY S-adenosylmethionine decarboxylase 15 280 IPR016067 GO:0004014|GO:0008295
Amo15g1161 301 PANTHER S-ADENOSYLMETHIONINE DECARBOXYLASE PROENZYME 3 3 174 - -
Amo15g1161 301 PANTHER S-ADENOSYLMETHIONINE DECARBOXYLASE PROENZYME 3 175 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g1161 Amo-Chr15 92182639 92183715 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g1161 K01611 - gmx:121172625 441.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo15g1161 15 92182639 92183715 Amo15g1161 15 92182639 92183715 ECH