Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g0623 ATGGGAGCCACTACTAGCAGTGCCTTAACTTTAACGAGATGCTCTCTCTCTCATTCTCACTCTCACCTTTACCGCAACGCTATCTTCAATTCCATGCGTAACACTTCTCTTCGATTCTCCTCATCCGCGCCAATCAACAATGCCAGAGCCGGATCATCAAGTTATGAAGCATTGCTGTTGGATGCTGGCGGCACGCTTTTGCAATTACAAAACCCCGTTGAACAAACCTATGCATCTATCGGAACCAAATATGGTTTGAATTTGACTCCAGCTCAGATAAAGCAAGGATTTAAGAGGGCGTTTTCTGCTCCGTGGCCTGAAAAGCTACGTTACCAGGGAGATGGGAGGCCATTTTGGAAACTTGTAGTTTCTGAAGCCACTGGTTGCAGTGATGAAGATTATTTTGAGGAAGTTTACAAGTATTATGCAAATGGAGATGTGTGGCATCTTCCAGATGGAGCTTATGAAACAATTACTCTTCTCAAGGATGCCGGAGTTAAGATGGCTGTTGTATCCAACTTTGATTCCCGCTTAAGGAAACTATTGAAGGATCTTAATGTTTTGAATCTGTTTGATGCTGTCATTATATCCTCTGAGGTTGGATATGAAAAACCAGACCCGAGAATATTTCAAGCTGCTCTAGATCAAATAAATGTAGAAGCTAACAAAGCCTTACACATTGGCGATGATGAAAAGGCTGATAAACATGGGGCAAATGCTCTGGGGATAGATTGCTGGTTGTGGGGGGTTGATGTGAAGTCATTCTATGAGATAAAAATCCGGATACTCGATTCAAACTGA 801 0.4257 MGATTSSALTLTRCSLSHSHSHLYRNAIFNSMRNTSLRFSSSAPINNARAGSSSYEALLLDAGGTLLQLQNPVEQTYASIGTKYGLNLTPAQIKQGFKRAFSAPWPEKLRYQGDGRPFWKLVVSEATGCSDEDYFEEVYKYYANGDVWHLPDGAYETITLLKDAGVKMAVVSNFDSRLRKLLKDLNVLNLFDAVIISSEVGYEKPDPRIFQAALDQINVEANKALHIGDDEKADKHGANALGIDCWLWGVDVKSFYEIKIRILDSN* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g0623 266 Gene3D - 71 143 IPR044924 -
Amo15g0623 266 SUPERFAMILY HAD-like 55 249 IPR036412 -
Amo15g0623 266 Pfam Haloacid dehalogenase-like hydrolase 130 245 IPR041492 -
Amo15g0623 266 SFLD Haloacid Dehalogenase 55 247 - -
Amo15g0623 266 TIGRFAM HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 159 242 IPR006439 -
Amo15g0623 266 PANTHER - 11 265 - -
Amo15g0623 266 TIGRFAM HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 156 245 IPR006439 -
Amo15g0623 266 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 55 247 - -
Amo15g0623 266 CDD HAD_dREG-2_like 154 249 - -
Amo15g0623 266 Gene3D - 59 248 IPR023214 -
Amo15g0623 266 PANTHER F14L17.7 PROTEIN 11 265 - -
Amo15g0623 266 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 55 66 IPR006439 -
Amo15g0623 266 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 161 174 IPR006439 -
Amo15g0623 266 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 191 207 IPR006439 -
Amo15g0623 266 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 209 229 IPR006439 -
Amo15g0623 266 TIGRFAM DREG-2: HAD hydrolase, REG-2-like, family IA 57 247 IPR011949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g0623 Amo-Chr15 39845194 39848776 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g0623 - - gmx:100306694 377.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo15g0623 15 39845194 39848776 Amo15g0623 15 39845194 39848776 ECH