Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g0376 ATGGCGGAGAGTCTGTCATGTCGCTTTCTTCTAGTTCTTTCTGAAAACTGGGAACTTAAACCGGCGAAGAACATCATGACTGGTGGTAGTGGATACATGGTAGAAGTTACTGGACTTTCGCCAAAAACCACCGAGAAAGATCTCCACCATTTCTTCGCTTTCTCCGGCGCGATCGAGCACGTTGAAATCGTTAGGTCTGGTGATTGTGCTTGTACTGCATATGTGACATTCAAAGATGCATATTCTCAAGAAACTGCTTGCTTGCTTAGTGGAGCCACTATTTTAGATCAACGTGTATGCATAACGCGTTGGGGGCAGTGCGATGATGGCTATGGTTTTTGGAATCAGCCTTCCTACAACCGTGACGATGAGACTGCTTCAAATACACAACATAGAGACCAATTTGTTTCCTCTGCTGGAGAAGCAGTTACTGCGGCTCAAGAAGTTGTGAAGACCATGCTAGCAAAGGGATATGTTCTCAGTAAGGACGCATTGGCTAAGGCTAGAGAGTTCGACGAGTCTCATCAGGTTTCTGCGACTGCAACAGCGAAAGTTTCTGAACTGAGCGAGAGACTTCGCCTCGCTGACAAGATATCAACAGGTGTTGGAGCTGTGAAATCTGTGGATCAGAAATATAATATCTCTGAAATAGCCAGGTCAGCTGCATCTGCAACTGGAAGATCGGTGGCAGCCGCCGGGGACTCTGTAGTAAATAGTAGCTATTTTTCGAAGGGAGCATTGTGGCTGTCAGGTGCTCTAACCCGAGCGGCTCATGTTGCTTCTGACTTGGGTGCTCGTGGCGATGGTCAGCACTGA 816 0.4743 MAESLSCRFLLVLSENWELKPAKNIMTGGSGYMVEVTGLSPKTTEKDLHHFFAFSGAIEHVEIVRSGDCACTAYVTFKDAYSQETACLLSGATILDQRVCITRWGQCDDGYGFWNQPSYNRDDETASNTQHRDQFVSSAGEAVTAAQEVVKTMLAKGYVLSKDALAKAREFDESHQVSATATAKVSELSERLRLADKISTGVGAVKSVDQKYNISEIARSAASATGRSVAAAGDSVVNSSYFSKGALWLSGALTRAAHVASDLGARGDGQH* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g0376 271 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 97 IPR000504 GO:0003723
Amo15g0376 271 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 106 IPR000504 GO:0003723
Amo15g0376 271 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 30 268 - -
Amo15g0376 271 Gene3D - 16 106 IPR012677 -
Amo15g0376 271 SUPERFAMILY RNA-binding domain, RBD 32 104 IPR035979 GO:0003676
Amo15g0376 271 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 30 268 - -
Amo15g0376 271 CDD RRM_Vip1_like 34 102 IPR034360 -
Amo15g0376 271 SMART rrm1_1 33 103 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g0376 Amo-Chr15 16804742 16807392 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g0376 - - gsj:114378905 370.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo15g0376 15 16804742 16807392 Amo15g0376 15 16804742 16807392 ECH