Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g0163 ATGGCGCGCAAGAAGATCAGAGAGTATGACTCCAAGAGATTGTTGAAGGAGCACTTTAAGAGACTCTCTGGCCGAGACTTGCAGATCAAGTCTGCACAAGTTACATCATCCACTGATTTCGCTGAGCTTCAAGAGAAGGAACCTTGGCTTTCATCTTCAAAATTGGTTGTGAAGCCTGATATGTTGTTCGGGAAGCGTGGCAAGAGTGGCTTGGTTGCCTTGAATTTGGATTTGGCACAAGTTGCTTCATTTGTGAAAGAGCGACTTGGAACCGAGGTTGAGATGAGTGGTTGCAAAGGACCCATAACAACTTTCATTGTTGAACCTTTCGTCCCCCACAAAGAAGAGTTTTACCTTAACATTGTATCCGAGAGGCTTGGGAACAGCATAAGCTTTTCAGAATGTGGAGGAATTGAAATTGAAGAAAACTGGGATAAGGTTAAGACTGTATTTGTTCCAACTGGAGCGTCTTTCACATCTGAAACTATTGCCCCACTTGTTGCAACCCTTCCCTTGGAGATCAAGGGAGAAATTGAGGAATTTCTCAAGGTGGTTTTCAATATATTTCAAGACCTGGATTTCACTTTCTTAGAGATGAACCCATTCACATTGGTTGATGGAAAGCCTTATCCTTTGGATATGAGAGGCGAACTAGACGACACTGCTGCTTTCAAGAACTTCAAGAAATGGGGAGACATTGAATTCCCATTGCCATTTGGAAGGGTTATGAGTGCCACTGAAGCTTTCATTCATGGATTAGATGAAAAGACAAGTGCATCTTTGAAATTCACAGTGCTGAACCCAAAGGGCCGAATTTGGACAATGGTAGCTGGCGGAGGTGCTAGTGTCATCTACGCTGATACGGTTGGAGACCTTGGCTTTGCATCTGAGCTTGGAAACTATGCTGAATATAGCGGTGCACCCAAGGAAGATGAGGTCTTGCAGTATGCCAGAGTTGTGATTGATGCCGCAACTGCAGACCCTGATGGCCAAAAGCGAGCTCTTGTGATAGGAGGAGGCATTGCTAACTTCACTGATGTTGCTGCTACATTTAGTGGCATAATTCGAGCTCTAAAAGAAAAGGAAGCCAAGTTAAAAGCAGCAAGGATGCAAATCTACGTGAGGCGAGGGGGTCCCAACTACCAAAAGGGTCTGGAGAAAATGCGAGCCCTCGGAGAGGAGCTTGGCATCCCCATTGAGGTTTATGGACCTGAAGCAACAATGACTGGCATATGCAAACAGGCAATAGAGTACATCACTGCTGCAGCTTAA 1272 0.4505 MARKKIREYDSKRLLKEHFKRLSGRDLQIKSAQVTSSTDFAELQEKEPWLSSSKLVVKPDMLFGKRGKSGLVALNLDLAQVASFVKERLGTEVEMSGCKGPITTFIVEPFVPHKEEFYLNIVSERLGNSISFSECGGIEIEENWDKVKTVFVPTGASFTSETIAPLVATLPLEIKGEIEEFLKVVFNIFQDLDFTFLEMNPFTLVDGKPYPLDMRGELDDTAAFKNFKKWGDIEFPLPFGRVMSATEAFIHGLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGFASELGNYAEYSGAPKEDEVLQYARVVIDAATADPDGQKRALVIGGGIANFTDVAATFSGIIRALKEKEAKLKAARMQIYVRRGGPNYQKGLEKMRALGEELGIPIEVYGPEATMTGICKQAIEYITAAA* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g0163 423 PANTHER ATP-CITRATE SYNTHASE ALPHA CHAIN PROTEIN 1-RELATED 1 423 - -
Amo15g0163 423 Pfam ATP-grasp domain 6 203 IPR013650 -
Amo15g0163 423 Gene3D - 1 233 - -
Amo15g0163 423 PANTHER ATP-CITRATE SYNTHASE 1 423 - -
Amo15g0163 423 Pfam ATP citrate lyase citrate-binding 241 417 IPR032263 -
Amo15g0163 423 SUPERFAMILY Glutathione synthetase ATP-binding domain-like 4 236 - -
Amo15g0163 423 Gene3D - 240 422 IPR016102 -
Amo15g0163 423 SUPERFAMILY Succinyl-CoA synthetase domains 257 404 IPR016102 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g0163 Amo-Chr15 5965373 5969651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g0163 1 423 Acyl Lipid Metabolism Gene Families AT1G10670 87.470 0.0 775
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g0163 K01648 - gmx:100818180 777.319
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo15g0163 15 5965373 5969651 Amo15g0163 15 5965373 5969651 ECH
Amo05g1970 05 42610222 42614532 Amo15g0163 15 5965373 5969651 hybridization