LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo15g0152	ATGATTATCCCAGTCCGTTGCTTCACCTGCGGAAAGGTCATCGGAAACAAATGGGATGCCTATTTGGACCTTCTCCAGTCAGATTACTCTGAAGGAGATGCGCTTGATGCTTTGGGGCTGGTTCGTTATTGTTGTAGGCGTATGCTTATGACGCATGTTGACCTCATCGAGAAGCTCCTGAATTACAACACTCTTGACAAGTCTGATCCCAGTTAG	216	0.4676	MIIPVRCFTCGKVIGNKWDAYLDLLQSDYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDPS*	72

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo15g0152	71	ProSitePatterns	RNA polymerases N / 8 Kd subunits signature.	2	11	IPR020789	GO:0003677\|GO:0003899\|GO:0006351\|GO:0008270
	Amo15g0152	71	PANTHER	-	1	71	-	-
	Amo15g0152	71	Hamap	DNA-directed RNA polymerase subunit Rpo10 [rpo10].	2	56	IPR000268	GO:0003677\|GO:0003899\|GO:0006351
	Amo15g0152	71	SUPERFAMILY	RNA polymerase subunit RPB10	1	63	IPR023580	-
	Amo15g0152	71	Gene3D	-	1	69	-	-
	Amo15g0152	71	PANTHER	DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 FAMILY MEMBER	1	71	IPR000268	GO:0003677\|GO:0003899\|GO:0006351
	Amo15g0152	71	PIRSF	RpoN_RPB10	1	70	IPR000268	GO:0003677\|GO:0003899\|GO:0006351
	Amo15g0152	71	Pfam	RNA polymerases N / 8 kDa subunit	2	59	IPR000268	GO:0003677\|GO:0003899\|GO:0006351

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo15g0152	Amo-Chr15	5755470	5756812	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo15g0152	K03007		-	gmx:100527000	150.214

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Amo15g0152	15	5755470	5756812	Amo15g0152	15	5755470	5756812	ECH