Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g0139 ATGCTCAAAGATTCCTCTGAAGATCAGGAATTAAGTAATATGAAGGTTAGAAATTATGATGCAGCAGAAAGTGTAGCTCAGAGCTTAAGGAATAGTCATGAGGAATCAGCTAAGGTTTCTTCATTTCCATTGGATTTGGGTAGCGGTTTGTGCCCCGTGGATTCTCTTGAACCAACTTCTATTAAGGAAGCTGGAAACTTTTTCTTGGTTCATAAAGTAACCCAGTCCTCACCTTCCCCTGCAATGTGTTTTGTGGCAAAGGTTCCTCAAGATGAACAAGAATCTCATATTGTAGCTTTTAGTTCAGAAGATGGATCCCGGAAGTTGGATGACGAGTCGACTTCATCTAGGACCATAGGTGTACGGGATGTACATATTTCGATGCGGTTAATGGAGGACTTCCTCCATCTTGCTAAAGAAAATACAGAAAAGGATGTGGAAACTTGTGGCATACTTGGTGCTGTACACGAGAATGGAACCCTCTATATGACTACTCTGATCATACCTAAGCAAGAATCAGCTTCCAATTCTTGTCAAGCTACAAATGAGGAGGAAGTTTTCAAAATTCTAAATGAAAGATCTCTTTATCCTGTGGGATGGATCCATACACATCCTTCTCAAAGTTGTTTCATGTCATCAGTGGATCTGCACACTCAATATTCCTACCAGATGATGATTCCTGAGGCATTTGCCATTGTCCTAGCTCCTACAGATACCTCAAGGAGCTGTGGACTATTTCGCCTAACTGACCCTGAAGGAATGAATATACTAAAGAATTGCATGGACAAAGGATTCCATCCACACAAAGACCCTGATAATGGCAACCCCTTGTATGAACATTGCTCCAATGTCTACAAGAACTCCAATCTAAGGTTTGAAATATTCGATTTACGCTAA 897 0.408 MLKDSSEDQELSNMKVRNYDAAESVAQSLRNSHEESAKVSSFPLDLGSGLCPVDSLEPTSIKEAGNFFLVHKVTQSSPSPAMCFVAKVPQDEQESHIVAFSSEDGSRKLDDESTSSRTIGVRDVHISMRLMEDFLHLAKENTEKDVETCGILGAVHENGTLYMTTLIIPKQESASNSCQATNEEEVFKILNERSLYPVGWIHTHPSQSCFMSSVDLHTQYSYQMMIPEAFAIVLAPTDTSRSCGLFRLTDPEGMNILKNCMDKGFHPHKDPDNGNPLYEHCSNVYKNSNLRFEIFDLR* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g0139 298 ProSiteProfiles MPN domain profile. 124 254 IPR037518 -
Amo15g0139 298 CDD MPN_AMSH_like 122 298 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Amo15g0139 298 Gene3D Cytidine Deaminase, domain 2 102 298 - -
Amo15g0139 298 SMART pad1_6 123 251 IPR000555 GO:0005515|GO:0008233|GO:0008237
Amo15g0139 298 Coils Coil 296 298 - -
Amo15g0139 298 SUPERFAMILY JAB1/MPN domain 124 254 - -
Amo15g0139 298 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 121 228 IPR000555 GO:0005515|GO:0008233|GO:0008237
Amo15g0139 298 PANTHER FI19924P1 68 298 - -
Amo15g0139 298 PANTHER AMSH-LIKE PROTEASE 68 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g0139 Amo-Chr15 5365395 5369642 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g0139 K11866 - gmx:100807282 433.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo15g0139 15 5365395 5369642 Amo15g0139 15 5365395 5369642 ECH