Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g0003 ATGGCTCTGTCACGCATAGCATCATCAACTCATGCATCCAACCTCCTTAAACCCCTCTCCGCCGCCTTATCCATCCGCCGCGTTATCTCCTCCGACTCCACCGATCCCCTCACCATCGAAACCTCTCTTCCATTCATCTCCCATAAATGCGACGCGCCCCCACGCGCCGTCGACACCTCCGCCTCGGAGCTCTTCTCCTTCTTCCGGGACATGGCCACCATGCGCCGCATGGAGATCGCCGCCGACTCACTCTACAAGGCCAAGCTCATCCGCGGCTTCTGCCACCTTTACGACGGTCAGGAGGCTGTGGCCATCGGCATGGAGGCCGCCATCACCAAGAAYGACGCCATCATCACCGCCTACCGCGACCACTGCARCTTTATTGGCCGCGGAGGCACGCTCCTCGAGGTCTTCGGCGAGCTCATGGGCCGCATCTGCGGCGGCTCCAAGGGCAAGGGCGGCTCCATGCACTTCTACCGCAAGCAGACCAATTTTTTCGGTGGCCACGGCATCGTCGGAGCTCAGATTCCGCTTGGATGTGGGTTGGCGTTTGCTCAGAGGTACTCCAAGGAAGAGAATGTGACATTTACCTTGTATGGTGATGGTGCTGCCAACCAGGGCCAATTGTTTGAGGCACTTAATATGGCAGCGCTTTGGGACCTACCTGCGATCTTGGTCTGCGAGAATAACCATTATGGGATGGGAACAGCAGAGTGGAGAGCTGCTAAAAACCCTGCTTATTACAAGCGTGGAGATTATGTTCCTGGGTTGAAGGTTGATGGCATGGATGTTCTTGCTGTGAAACAAGCTTGCAAGTTTGCAAAGGAGCATGCTTTGAAAAATGGGCCCCTTATTCTTGAAATGGACACCTATAGATACCACGGGCACTCTATGTCTGATCCTGGAAGCACATACCGTACACGTGACGAGATTTCCGGTGTGAGACAGGAGCGTGATCCAATTGAGAGAGTAAGGAAGCTATTATTGGCTCATGACATTGCTTCTGAGAAGGAGCTAAAGGACATTGAGAAACAAGTCAGAAAAGATGTCGATGATGCCATCGCTAAAGCAAAGGAATGCCCAATGCCAGACCCATCTGAACTATTTACCAATGTATATGTTAAGGGTTTAGGAGTTGAGTCATTTGGTGCTGATAGGAAAGAAGTGAGAGCTACTTTGCCGTGA 1185 0.5257 MALSRIASSTHASNLLKPLSAALSIRRVISSDSTDPLTIETSLPFISHKCDAPPRAVDTSASELFSFFRDMATMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAIGMEAAITKNDAIITAYRDHCXFIGRGGTLLEVFGELMGRICGGSKGKGGSMHFYRKQTNFFGGHGIVGAQIPLGCGLAFAQRYSKEENVTFTLYGDGAANQGQLFEALNMAALWDLPAILVCENNHYGMGTAEWRAAKNPAYYKRGDYVPGLKVDGMDVLAVKQACKFAKEHALKNGPLILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERVRKLLLAHDIASEKELKDIEKQVRKDVDDAIAKAKECPMPDPSELFTNVYVKGLGVESFGADRKEVRATLP* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g0003 394 Pfam Dehydrogenase E1 component 70 365 IPR001017 GO:0016624
Amo15g0003 394 Gene3D - 23 388 - -
Amo15g0003 394 TIGRFAM PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit 62 374 IPR017597 GO:0004739|GO:0006086|GO:0043231
Amo15g0003 394 PANTHER PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR 10 394 - -
Amo15g0003 394 CDD TPP_E1_PDC_ADC_BCADC 67 357 - -
Amo15g0003 394 PANTHER PYRUVATE DEHYDROGENASE E1 COMPONENT SUBUNIT ALPHA, MITOCHONDRIAL 10 394 - -
Amo15g0003 394 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 52 375 IPR029061 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g0003 Amo-Chr15 59476 63757 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g0003 1 394 Acyl Lipid Metabolism Gene Families AT1G24180 78.535 0.0 662
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g0003 K00161 - fve:101298701 678.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo15g0003 15 59476 63757 Amo15g0003 15 59476 63757 ECH
Amo05g1736 05 34718647 34722865 Amo15g0003 15 59476 63757 hybridization
Amo15g0003 15 59476 63757 Amo05g1736 05 34718647 34722865 PCT
Amo05g1736 05 34718647 34722865 Amo15g0003 15 59476 63757 PCT