Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g1392 ATGCTTGTGGCATTGCTCTTGCTTCTGGCATGGAGCAATGCCGTGATAATTGTTGATGGATATGGTGGACAATGTAGTTTGAATCCAACACTTGATCCTAGACTACATAGTGTCTCAATTCTTGAGTTTGGTGCTGTTGGAGATGGCAAAACACTCAACACAATCCCTTTCCAAAATGTTGTCTTCTATCTCAAGTGCTACTATTATTGGATCTCAGGTAACAATGGAACCATCAACGGCATGGGATCTGTTTGGTGGGAGTGGTTTACCTTGCATACACTAAATCATATCCGTCCTCATCTGATTGAACTTGTCGAATCTGATTATGTGGTAGTTTCAAATCTCACAATCTTGAACCCCCGGCATACGCAATATACCATGTTTATTGCAGGTATCTATGTACATATTCAAAATGTATCAATTTCTGCTCTTGCAGAATCACCTTTTACTGTTGGTATAGTTCCTGATTCTTCTAATAATGTTTGTATAGAAGATTGCATTGTTGCTATGGGACATGATGCAATTTCTCTTAAAAGTGGTTGGGATGAGTATGGTGTTGCCTATGGTAGACCAACAGAGAATGTACACATTAGAAGGGTGACTTTGAGTGCATTTTCTGGCTCTACTCTTGCATTTGGTAGTGAAATGTCTGGTGGTCTTTCGAATGTTTTCATGGAACATTCTCATGTTCTCGACTCGGATAAAGGCGTCCAGTTCAGAACAACCAGAGGTAGAGGTGGTTACATGAAAGAAATTGTTATATCTGACATACAAATGGACAATGTCTATGTTGCTATTGCGGCCACAGGTCATTGTAGTTCTCATCCTAATGACAAGTTTGATCCAAACGCTCTTCCACATTTGGATTTTATCACCTTGAAGGGTGTTATTGGCAGAAACATCACTGTTGCCGGAAGCTTTGCTGGAATAGAAGAATCCCCTTTCACCAACATATGCCTTTCCAACATAACCTTGTCTATAAACTCTATTTCAAGTGCCTGGGAATGTTCAAATGTCTTAGGATCTTCGAATTTTGTCAATCCTGAACCTGGTCCAGAACTTCGGAACCCTACAAACTCTTCCTTGTCGTGTTTCTACTTACTGAGTACCAGTGGAAGAAAAGCCTCAGCATTGTGA 1137 0.4037 MLVALLLLLAWSNAVIIVDGYGGQCSLNPTLDPRLHSVSILEFGAVGDGKTLNTIPFQNVVFYLKCYYYWISGNNGTINGMGSVWWEWFTLHTLNHIRPHLIELVESDYVVVSNLTILNPRHTQYTMFIAGIYVHIQNVSISALAESPFTVGIVPDSSNNVCIEDCIVAMGHDAISLKSGWDEYGVAYGRPTENVHIRRVTLSAFSGSTLAFGSEMSGGLSNVFMEHSHVLDSDKGVQFRTTRGRGGYMKEIVISDIQMDNVYVAIAATGHCSSHPNDKFDPNALPHLDFITLKGVIGRNITVAGSFAGIEESPFTNICLSNITLSINSISSAWECSNVLGSSNFVNPEPGPELRNPTNSSLSCFYLLSTSGRKASAL* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g1392 378 Pfam Glycosyl hydrolases family 28 71 339 IPR000743 GO:0004650|GO:0005975
Amo14g1392 378 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 2 67 - -
Amo14g1392 378 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 71 371 - -
Amo14g1392 378 SUPERFAMILY Pectin lyase-like 33 355 IPR011050 -
Amo14g1392 378 Gene3D - 28 348 IPR012334 -
Amo14g1392 378 PANTHER PECTIN LYASE-RELATED 2 67 - -
Amo14g1392 378 PANTHER PECTIN LYASE-RELATED 71 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g1392 Amo-Chr14 23196459 23198715 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g1392 3 67 Glycoside Hydrolase AT3G06770 50.000 3.35e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g1392 - - gmx:100777503 441.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g1392 14 23196459 23198715 Amo14g1392 14 23196459 23198715 ECH