Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g1253 ATGCAATGCACAACAGTGCCTCCTCCTTTCGGAGCTCTCGCTCTTAATATATTCCTACCTACCTCACCTCACCTGCTTCCTCTTTCTCGCGTTTCAAACAAACAACTCATCACTCGTTTCGTTTCGTTTCTCATTTTCTCGTCGCAAAACTCATTCACATTCGCGAGATTTTCAACTGCGCCTCAATTGCAGATTCGCTTCCAGTGTAGGGCGCGGATTTTTGGCCCCAAAACTCGTGCAGTGAACAAATTGAACGAAAGGAATAAAGGAGAAGATTCAGGTGAAGTAATAATCATGTTCTTCAGCGGTGATCCTTCGACGCGTAAGCGCATTGATTTAGGTGGTCGCAGCTCGAAGGAAAGGGACCGGAAGAATCTTCTGGAGCAGACAAGGTTGGAGCGAAATCGCCGCATGTGGTTGCGCCAGCAGAATTCTGCTGCGATTAAGATTCAGAAATGCTACAGAGGGAGAAAAGTTGTCCGGAATGAACAGTCTAAGCTGCGAGAGAAATGCCATAAAATCTATGGGAAGTACTGCCAGAATTTAGACAGGAGTGCTTTTGGTCCAGATTCTGATTTCCTCCGGCAGTTCCTCTTTTTCTTTAATGCAGAAAATAATGATGATGTTTTAGCTCTTGTGAATATTTGTCGACTGCTTCAACAGTTTGTTCAACAGAGTGGGGACGTTGTGAGGCTTTTTTCTGGTTTAGATTACTCATCCACTTGTCCTCTGGTCAACTATCGGGTGAAGCAGTTGGTATATACTTGTATTCGAGCCTTACATCAGAATAGAAATCAGTTGAAGGATCAATTTTTATTGGTTCCTGAGGAATCTAGTGTAACAGCTATTCCTTTATTGGAAGTTTTAGTGTTATTGATAGATATCAAACTTCCATGGAGCTGTAAGATAGTAGGACATATGTTTCAAAACAATGCATTTGGTCTACTTAGAGAGATTATTCTCACAGCAAAGGATGATGTAGATAATCGTATTTACCCCGCAAAGGGATCATCATTGGAACGTGTGCTTACTGTTGTAATGTGTCATATTGGTCAGAAGCCATGTATCTGTTCATATTTTGATCCAAGATATGACTTCTCTTCGCAAATCCTTACAATTCCGTTCCTGTGGAATGCTTTTCCAGACTTAAGACAGGTTTATGCAACACAAGGCCTGAATCAACATTATGTTCATCAGATGGCAACTCTTGTTCCAGATCTAATCAATTTTCTACCTAAGGACATATCTGATGAAATTCCTACCTATGCCTGTCTGCTTGGAAATATATTAGAAACCGCGGGAATTGCTTTGTCACAACCTGACTGTTCGATTATGACTGTGCTTGCTTACAGAACCGAACTTGTTCCTATGRTATGGAAATTTATGAAGCAGTGTCATGAGAATAAACAARGGTTATCTTTGTCTGAGRGGTTATCTTACCTTTCTGGTGACGCACCTGGTTGGCTGTTACCTCTGGCTGTATTCTGTCCTGTCTACAAGCACATGCTCATGATAGTTGATAATGAGGAGTTCTATGAGCAGGGGAAACCACTATCACTGGAGGACATTAGAAGCCTAATCATTCTGTTAAAACAGGTTCTGTGGCAGTTGTTGTGGGTGAATCATACATCATCTGCTACTCCAGTAAAATCTGTTCCAGTTACCACGGTTAGTAAAAGGCAATCTATTGAAGCCATTCAACAGAGGGTTAGCATTGTGGTCTCTGAGCTGCTCTCCCAGCTGCAAGATTGGAACAATCGTCGACAGTTTACTTCCCCCACTGACTTCCATGCTGATGGGGTGAATGACTCCTTCATCTCTCAGGCTTTGATGGAAAAGACACGAGCAAATGAAGTTTTAAAACAGGCTGCTTTGTTGATACCATTTACAAGCAGGTCTCAACTAGCTGATGTTCGGCAACAACATGGATCTCAGGCCTTATTTACTAGAAACAGATTCAGAATAAGACGAGATCATATCTTGWAGGATGCTTATAATCAAATGAGCCAGTTGTCAGAAGATGATCTTCAGGGATTGATTCGTGTGAGTTTTGTAAATGAATTTGGAGTTGAAGAGGCTGGAATAGATGGAGGTGGAATATTCAAAGATTTCATGGAGAACATCACACGTGCTGCCTTTGATGTGCAGTATGGATTATTTAAGGAAACAGCAGATCACCAGCTTTATCCCAATCCTGGATCAGGGATGATACATGAACAACATCTTCAATTTTTCCACTTTCTTGGTACACTCCTTGCAAAGGCAATGTTTGAAGGGATTCTGGTTGATTTACCATTTGCTACTTTCTTTTTGAGCAAATTGAAACAAAAGCACAACTATTTGAATGACTTGCCATCTTTGGACCCAGAATTGTATCGTCATCTTATATTTCTAAAGCATTATGAGGGTAACATTTCGGAGTTGGAACTATACTTTGTTATAGTAAACAATGAATATGGAGAGCAAACTGAAGAGGAGCTCCTACCTGGTGGGAAAAACAAACGTGTCACTAATGAGAATGTCATTACTTTTATCCATCTTGTAGCTAATCATCGCTTGAATTCTCAGATACGTCAACAAAGTTCTCATTTCCTGAGAGGATTTCAGCAACTTATTCAGAAAGATTGGATTGATATGTTTAACGAGCAAGAACTGCAGCTTTTGATATCGGGTTCACTTGACAGCTTGGATGTTGATGATTTGCGACTTCATACAAATTATGCAGGAGGCTATCATAGCGAGCATTATGTGATTGAGATGTTCTGGGAAGTTCTCAAAGGATTTTCCACGGAAAACAAGAAAAAGTTTTTGAAATTTGTGACAGGCTGCTCTCGCGGACCATTGCTTGGTTTCCGGGCTGGTGGTAATGCTATTGATGAAGCCCTAGATCGATTACCCACATCAGCTACTTGTATGAATCTGCTCAAGCTTCCGCCTTATACAAGTAAGGAGCAAATGGAAACCAAATTATTGTATGCTATAAATGCCGAAGCTGGATTTGATTTGAGTTAA 3012 0.4077 MQCTTVPPPFGALALNIFLPTSPHLLPLSRVSNKQLITRFVSFLIFSSQNSFTFARFSTAPQLQIRFQCRARIFGPKTRAVNKLNERNKGEDSGEVIIMFFSGDPSTRKRIDLGGRSSKERDRKNLLEQTRLERNRRMWLRQQNSAAIKIQKCYRGRKVVRNEQSKLREKCHKIYGKYCQNLDRSAFGPDSDFLRQFLFFFNAENNDDVLALVNICRLLQQFVQQSGDVVRLFSGLDYSSTCPLVNYRVKQLVYTCIRALHQNRNQLKDQFLLVPEESSVTAIPLLEVLVLLIDIKLPWSCKIVGHMFQNNAFGLLREIILTAKDDVDNRIYPAKGSSLERVLTVVMCHIGQKPCICSYFDPRYDFSSQILTIPFLWNAFPDLRQVYATQGLNQHYVHQMATLVPDLINFLPKDISDEIPTYACLLGNILETAGIALSQPDCSIMTVLAYRTELVPMXWKFMKQCHENKQXLSLSEXLSYLSGDAPGWLLPLAVFCPVYKHMLMIVDNEEFYEQGKPLSLEDIRSLIILLKQVLWQLLWVNHTSSATPVKSVPVTTVSKRQSIEAIQQRVSIVVSELLSQLQDWNNRRQFTSPTDFHADGVNDSFISQALMEKTRANEVLKQAALLIPFTSRSQLADVRQQHGSQALFTRNRFRIRRDHILXDAYNQMSQLSEDDLQGLIRVSFVNEFGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETADHQLYPNPGSGMIHEQHLQFFHFLGTLLAKAMFEGILVDLPFATFFLSKLKQKHNYLNDLPSLDPELYRHLIFLKHYEGNISELELYFVIVNNEYGEQTEEELLPGGKNKRVTNENVITFIHLVANHRLNSQIRQQSSHFLRGFQQLIQKDWIDMFNEQELQLLISGSLDSLDVDDLRLHTNYAGGYHSEHYVIEMFWEVLKGFSTENKKKFLKFVTGCSRGPLLGFRAGGNAIDEALDRLPTSATCMNLLKLPPYTSKEQMETKLLYAINAEAGFDLS* 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g1253 1003 SUPERFAMILY Hect, E3 ligase catalytic domain 640 995 IPR035983 GO:0004842
Amo14g1253 1003 Gene3D Hect, E3 ligase catalytic domain 777 856 - -
Amo14g1253 1003 Gene3D Hect, E3 ligase catalytic domains 653 891 - -
Amo14g1253 1003 Pfam HECT-domain (ubiquitin-transferase) 708 1003 IPR000569 GO:0004842
Amo14g1253 1003 CDD HECTc 651 1001 IPR000569 GO:0004842
Amo14g1253 1003 ProSiteProfiles HECT domain profile. 672 1003 IPR000569 GO:0004842
Amo14g1253 1003 SMART hect_3 670 1003 IPR000569 GO:0004842
Amo14g1253 1003 ProSiteProfiles IQ motif profile. 143 170 IPR000048 GO:0005515
Amo14g1253 1003 Gene3D Hect, E3 ligase catalytic domain 895 1002 - -
Amo14g1253 1003 PANTHER BNAC01G43970D PROTEIN 444 1003 - -
Amo14g1253 1003 PANTHER BNAC01G43970D PROTEIN 99 444 - -
Amo14g1253 1003 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 99 444 IPR044611 GO:0000209|GO:0061630
Amo14g1253 1003 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 444 1003 IPR044611 GO:0000209|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g1253 Amo-Chr14 20032966 20048215 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g1253 K10589 - gmx:100787467 963.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g1253 14 20032966 20048215 Amo14g1253 14 20032966 20048215 ECH
Amo01g3342 01 105859338 105869379 Amo14g1253 14 20032966 20048215 PCT
Amo14g1253 14 20032966 20048215 Amo01g3342 01 105859338 105869379 PCT