Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5761 ATGAACAACAAGAAGATGCTGACGTCGAATTCTACAATCGGAATTGTGCTGTTTGCGTGTTTCTGCTTCGTAACGGTCACGGAGGCAGAAGAATACTTCAAGCCTTTTAATGTCAGCTACGATCACAGGGCTCTCATTATCGACGGCCACCGTCGCATCCTCATCTCTGCCGGAATTCACTACCCTCGCGCCACTCCCGAGATGTGGCCTGATCTGATTGCAAAGAGCAAGGAAGGCGGGGCAGACGTAATTGAAACTTATGTTTTCTGGAATGGGCATGAACCAGCGAGAGGACAGTATAATTTTGAAGGGAGATATGATCTTGTGAAGTTTGCAAAACTTGTTGCATCCAAGGGACTCTATTTCTTTTTGCGTATAGGACCTTATGCTTGTGCTGAGTGGAACTTTGGGGGTTTTCCTGTGTGGTTGCGTGATATCCCTGGTATTGTATTTAGAACAGACAATGAACCTTTCAAGGTGGAGATGGAGCGGTTTGTTTCTAAGGTGGTGAACATAATGAGAGACGAAAAGCTGTTTTCTTGGCAAGGAGGTCCTATAATTTTGTTGCAGATTGAGAATGAATATGGGAACATTGAAGGCTCCTTTGGCAAGGCAGGTAAAGAGTATACTAAATGGGCAGCTGGAATGGCTCTAAGTCTTGGTGCTGGTGTTCCTTGGGTCATGTGCAAGCAAACTGATGCTCCATATGATATTATTGATACATGCAACGCATACTATTGTGATGGGTTCAAACCTAACTCTCCTCACAAACCAATTATGTGGACAGAGAACTGGGATGGATGGTATACTCAATGGGGTGAAAGATTGCCCCATAGACCTGTTGAAGACCTTGCATTTGCTGTTGCACGGTTTTTCCAGCGTGGAGGAAGCTTTCAGAACTACTATATGTTTTTTGGTGGAACAAATTTTGGCCGCACTGCAGGGGGACCCCTGCAAATTACAAGTTACGATTATGATGCTCCAATTGATGAGTATGGTCTGCTTAGTGAGCCAAAATGGGGTCACTTGAAAGATTTACATGCTGCTTTAAAGCTTTGTGAGCCTGCTTTGGTGGCAGCTGATTCACCAACATACATAAAATTGGGCCCAAAGCAAGAGGCACATGTGTACCAATTAGATGTTCGCCCTAAATTAGTGAACTTGTCTCTTTCTGGATTTTCTAGTATATGCTCAGCATTTCTTGCCAACATTGACGAAAAGAAAACAGCTACTGTGACCTTCCAAGGTCGAACATATACTCTACCACCATGGTCTGTGAGTATTTTACCAGATTGCAGGAATACAGTTTACAATACTGCCAAGATTGGAGCACAAACTTCAGTCAAATTGTTAGACTTTGATTTGCCACTTGTCTCAAGTCTTTTCCCATCCCAGAAATTGATCAATCAAGATGGCATTTTCCGCAGCTCAAGTTCTTGGGTGACTGCAAAAGAGCCAATTCGTGTTTGGAGTAACAGCAGTTTCACTGTACAAGGTATATTGGAGCATTTAAATGTAACAAAGGATCAATCTGATTATCTTTGGTATTCAACCAGAATATATGTTTCAGATAGCGACATCTTGTTTTGGAAGGAAAATGATGTTACTCCAAAACTTACTATAGATGGCATCCGTGACATATTGCGTGTATTTATCAATGGCCAGCTTATAGGTAACACTGTTGGTCATTGGATCAAGGTGGTCCAGACAGTTCAATTTGCTCCAGGATACAATGATTTAACACTGTTATCTCAGACAGTGGGCTTACAGAATTATGGTGCCTTCCTTGAGAAAGATGGTGGAGGGATTAGAGGTACAATCAAGCTCACGGGATTCGAAAATGGAGATATAGATCTTTCAAAATCATTTTGGACCTACCAGGTTGGACTTCAGGGTGAGTTTCTAGAATTTTACAGTGAAGAGAATGATAATGCAGAATGGGTTGAATTAAGTCCTGATGCCCTTCCATCCATATTTACATGGTACAAGACATATTTTGATGTCCCTGATGGCACAAATCCAATTGCTCTTGACCTGCAAAGCATGGGGAAAGGTCAGGTTTGGGTGAATGGCAATCATATTGGACGATACTGGACATGGGTCTCCCCTAAAGATGGATGTGAACAATTTTGTGATTATCGTGGAGCATACAGTTCGGACAAGTGTACAACTAATTGTGGAAAACCTACTCAAACCTTGTACCATGTGCCACGGTCATGGCTGAGAGCATCAAACAATTTACTTGTCATTTTGGAGGAAACAGGTGGAAATCCGTTTGCGATTTCTGTTAAGTTGCATTCGGCCAGGACAATATGTGCTCAAGTGTCAGAATTGCACTATCCACCGTTGCAGAAATTGGTGAATGTAGATGTCATTGGTCAAGAAGTTTCCGTAGATAATATGATTCCTGAAATGCATTTATGGTGCCAAGATGGACAGATAATTTCCTCCATAACTTTTGCTGGTTTTGGAACACCTGAAGGTAGTTGTCAGAATTTTTCTCAAGGGCAATGCCATGCACCTAGTTCAATGTCCACGGTATCCAAGGCTTGCCAAGGGAAAAGTAGCTGTTCAATCAAAATATCGAGCAGTGTGTTCGGAGGTGACCCATGTGAAGGTGTTGTCAAAACATTGGCTGTGGAGGCAAGGTGCACATCACCGTCAAGTGATGGCTTCGTAAGCAGCGTTTAG 2691 0.4259 MNNKKMLTSNSTIGIVLFACFCFVTVTEAEEYFKPFNVSYDHRALIIDGHRRILISAGIHYPRATPEMWPDLIAKSKEGGADVIETYVFWNGHEPARGQYNFEGRYDLVKFAKLVASKGLYFFLRIGPYACAEWNFGGFPVWLRDIPGIVFRTDNEPFKVEMERFVSKVVNIMRDEKLFSWQGGPIILLQIENEYGNIEGSFGKAGKEYTKWAAGMALSLGAGVPWVMCKQTDAPYDIIDTCNAYYCDGFKPNSPHKPIMWTENWDGWYTQWGERLPHRPVEDLAFAVARFFQRGGSFQNYYMFFGGTNFGRTAGGPLQITSYDYDAPIDEYGLLSEPKWGHLKDLHAALKLCEPALVAADSPTYIKLGPKQEAHVYQLDVRPKLVNLSLSGFSSICSAFLANIDEKKTATVTFQGRTYTLPPWSVSILPDCRNTVYNTAKIGAQTSVKLLDFDLPLVSSLFPSQKLINQDGIFRSSSSWVTAKEPIRVWSNSSFTVQGILEHLNVTKDQSDYLWYSTRIYVSDSDILFWKENDVTPKLTIDGIRDILRVFINGQLIGNTVGHWIKVVQTVQFAPGYNDLTLLSQTVGLQNYGAFLEKDGGGIRGTIKLTGFENGDIDLSKSFWTYQVGLQGEFLEFYSEENDNAEWVELSPDALPSIFTWYKTYFDVPDGTNPIALDLQSMGKGQVWVNGNHIGRYWTWVSPKDGCEQFCDYRGAYSSDKCTTNCGKPTQTLYHVPRSWLRASNNLLVILEETGGNPFAISVKLHSARTICAQVSELHYPPLQKLVNVDVIGQEVSVDNMIPEMHLWCQDGQIISSITFAGFGTPEGSCQNFSQGQCHAPSSMSTVSKACQGKSSCSIKISSSVFGGDPCEGVVKTLAVEARCTSPSSDGFVSSV* 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5761 896 Gene3D - 634 771 - -
Amo13g5761 896 Pfam Beta-sandwich domain in beta galactosidase 366 442 IPR041392 -
Amo13g5761 896 PANTHER BETA-GALACTOSIDASE 10 29 879 - -
Amo13g5761 896 Pfam Galactose binding lectin domain 807 884 IPR000922 GO:0030246
Amo13g5761 896 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 183 195 IPR019801 GO:0004553|GO:0005975
Amo13g5761 896 Gene3D - 491 619 - -
Amo13g5761 896 PANTHER BETA-GALACTOSIDASE RELATED 29 879 IPR001944 GO:0004553|GO:0005975
Amo13g5761 896 SUPERFAMILY Galactose-binding domain-like 622 787 IPR008979 -
Amo13g5761 896 ProSiteProfiles SUEL-type lectin domain profile. 803 885 IPR000922 GO:0030246
Amo13g5761 896 Pfam Glycosyl hydrolases family 35 45 349 IPR031330 -
Amo13g5761 896 Gene3D Glycosidases 36 354 - -
Amo13g5761 896 PRINTS Glycosyl hydrolase family 35 signature 48 65 IPR001944 GO:0004553|GO:0005975
Amo13g5761 896 PRINTS Glycosyl hydrolase family 35 signature 317 333 IPR001944 GO:0004553|GO:0005975
Amo13g5761 896 PRINTS Glycosyl hydrolase family 35 signature 297 312 IPR001944 GO:0004553|GO:0005975
Amo13g5761 896 PRINTS Glycosyl hydrolase family 35 signature 124 143 IPR001944 GO:0004553|GO:0005975
Amo13g5761 896 PRINTS Glycosyl hydrolase family 35 signature 181 196 IPR001944 GO:0004553|GO:0005975
Amo13g5761 896 PRINTS Glycosyl hydrolase family 35 signature 260 275 IPR001944 GO:0004553|GO:0005975
Amo13g5761 896 PRINTS Glycosyl hydrolase family 35 signature 657 671 IPR001944 GO:0004553|GO:0005975
Amo13g5761 896 PRINTS Glycosyl hydrolase family 35 signature 684 700 IPR001944 GO:0004553|GO:0005975
Amo13g5761 896 PRINTS Glycosyl hydrolase family 35 signature 69 87 IPR001944 GO:0004553|GO:0005975
Amo13g5761 896 SUPERFAMILY Galactose-binding domain-like 426 612 IPR008979 -
Amo13g5761 896 Gene3D - 787 889 IPR043159 -
Amo13g5761 896 SUPERFAMILY (Trans)glycosidases 35 354 IPR017853 -
Amo13g5761 896 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5761 Amo-Chr13 159686543 159698681 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5761 32 849 Glycoside Hydrolase AT2G32810 69.597 0.0 1231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5761 - - ccaj:109799560 1550.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g5761 13 159686543 159698681 Amo13g5761 13 159686543 159698681 ECH