Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5636 ATGAAGAATAAGTTGGTGGTGGCGGTGGTGAGTGTGATAGTAGTAGCAGCGAGCGTAGTGCTAGAAGGATGCGAGTGCAGGACAGTGCAATTCATATTTGGGGACTCACTGTCGGATGTTGGAAACAACAAGTACCTGTCCAAGAGCCTCGCTCAGGCTAGCTTGCCGTGGTACGGCATTGATTTCGGAAACGGGCTCCCGAATGGCAGGTTCTCCAATGGGCGCACTATTCAGAGGTTCTCTCTCTACAAGCAAATTGAGCTGTTCGAGGGGACACAAGAACTAATAAGAGAGAAAATCGGGAAAGAGGAGGCAGACAAGTTTTTCAAGGAAGCAAGGTATGTGGTTGCACTGGGCAGCAATGACTTCATAAACAACTACTTGATGCCCGTATACAGGGACTCATGGACTTACAATGATGACACCTTCATACAATACCTGATACAAACACTGAGAGGCCAACTCACGGCTCTGCACGCATTGGGTGCAAGGCAGCTGATGGTCTTTGGGCTGGGCCCAATGGGCTGCATCCCCCTTCAGAGGGTGCTTTCGTCCTCCGCCTCCGGGGGCTGCCAACACAGAACCAACACCCTGGCCCTTAGCTTCAACAAAGCTGCCGCCAAATTGATGGACGACTTGGGGAAACAACTTGCCAATTCAAGCTTCAGATTTGGAGATGCTTATGATGTTGTCAACGATGTCATTTCCAACCCAAACAAGTATGGTTTTGAAAACTCAGATTCACCTTGTTGCTCGTTTGGGAGGATACGACCCGCTCTCACCTGTTTACCAGCTTCAAGGCTCTGCAAAGACAGAAGCAAGTACGTATTCTGGGATGAGTACCACCCCACAGACAGTGCTAACCAGCTCATAGCCAATGAACTTATCAAAAAGTTCGGCTTCTTGCGTCTTAATCAATCTTCATCTTCCCCTTCCCCTTCCCCTTCCCCTGCTAATTGA 960 0.4927 MKNKLVVAVVSVIVVAASVVLEGCECRTVQFIFGDSLSDVGNNKYLSKSLAQASLPWYGIDFGNGLPNGRFSNGRTIQRFSLYKQIELFEGTQELIREKIGKEEADKFFKEARYVVALGSNDFINNYLMPVYRDSWTYNDDTFIQYLIQTLRGQLTALHALGARQLMVFGLGPMGCIPLQRVLSSSASGGCQHRTNTLALSFNKAAAKLMDDLGKQLANSSFRFGDAYDVVNDVISNPNKYGFENSDSPCCSFGRIRPALTCLPASRLCKDRSKYVFWDEYHPTDSANQLIANELIKKFGFLRLNQSSSSPSPSPSPAN* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5636 319 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE 5 77 - -
Amo13g5636 319 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE 78 311 - -
Amo13g5636 319 SUPERFAMILY SGNH hydrolase 32 298 - -
Amo13g5636 319 Gene3D SGNH hydrolase 26 299 IPR036514 -
Amo13g5636 319 Pfam GDSL-like Lipase/Acylhydrolase 31 294 IPR001087 GO:0016788
Amo13g5636 319 PANTHER GDSL LIPASE/ACYLHYDROLASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_4G14700) 5 77 - -
Amo13g5636 319 PANTHER GDSL LIPASE/ACYLHYDROLASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_4G14700) 78 311 - -
Amo13g5636 319 CDD SGNH_plant_lipase_like 31 298 IPR035669 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5636 Amo-Chr13 158238637 158239822 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5636 31 295 Acyl Lipid Metabolism Gene Families AT4G10950 26.837 4.01e-41 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5636 - - adu:107463630 483.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g5636 13 158238637 158239822 Amo13g5636 13 158238637 158239822 ECH