Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5555 ATGGCTCCGAAGGCAAAACCCGTCGTCGCTGCTGCGGCGTCTCAGCCTCCTCCTCCCCTGGAAGATCTGTTCACCGCCCTCGACAGGCACATCAACTCCTTCTCCTTCGACAATGCCGTCAAACTCGCAGATCAGATTTTGGCGGTTGCACCCGCTGATGAAGACGCCCTCCGATGCAAGGTCGTGGCGCTCATCAAGGACGACCGCCTCGACCTCGCACTCTCCGCCATTCGATCTTCTCGCACCCATCTCCCTGATTTCGATTTCCTTAAGGCATACTGCTTATACAGACAAAACAAGTTGAATGAAGCTTTGGAGTCTTTGAAAACACAAGAGAGAACAACTGAAACTATGCTTTTGGAAGCTCAGATTTTGTACCGTCTTGGGAAGATGGATGCTTGCCTAGATATCTACCAGAAGCTCCAAAATTCCAAGATTGATAACTTGGAAATAAATTGTGTTGCCAGCCTAGTTATGGGCGGGAGGTCATCCGAAGTTCAAGGACTTCTGGATTCACTTCGGGTTAAAGCAACAAGTAGCTTTGAATTGGCATACAATACTGCTTGTTCTTTAATTGAAAGGAAGAAGTACACAGATGCAGAACAACTCCTGTTGTCAGGCCGAAGAATTGGTCAAGAGGTCCTGATGGAAGATAATTTGCCTGATGATGAGATAGAAAGTGAATTGGCTCCTCTAGCTGTACAATTGGCCTATGTCCAGCAGCTTCTTGGGTGTAAACAAGATGCTATTGAAGCTTATATAGACATCATTAAACGAGATATGGCTGATGAATCATCAATTGCAGTGGCAGTGAACAATCTTGTTTCACTGAGAGGTCCAAAAGATGTTTCTGATAGCCTAAGGAAACTTGATCGGCTCAAAGACAAAGAGGCACAGAACTTTCGGCTAGCTAGTGAACTAGACTTGAAACTTCCAGCAAAAGAAAAGGAAGCGATATATGCAAATAGGGTCCTTTTACTTCTTCATGCCAATAAGATAGACCAGGGCCGAGAACTTGTTTCCAGATTGCCAGACATGTTTCCAGAAAGTGTGATACCTATATTGCTGCAAGCTGCTGTCCTAGTTAGAGAGAACAAAGCTGGAAAGGCGGAGGAATTATTAGGACAGTTTGTTGGGAAGTACCCTGAGAAGTCCAAGGTTGTTCATTTGGCCAGGGCTCAGGTGGCTGCTGCTGCTGGTCACCCACATATTGCAGCTGATTCCGTGGCTAAGATATCAGATATCCAACACATGCCTGCTACTGTTGCCACCCTTGTCTCTTTAAAAGAACGTGCTGGTGACATTGAGGGTGCATCTGCTGTGCTTGATTCTGCTATCAAATGGTGGTCTAATGCTATGACTGAGGACAATAAGCTTAATATTATAATGCAAGAGGCTGCTTCATTCAAGATCAGGCATGGCAATGAAGATGATGCTGCTAAACTCTATGAGGAGCTAGTTAAAAGCCAAGGAGGCATAGAAGCACTGGTTGGGCTGGTAACAACAGTTGCACGCACAGATGTCGATAAGGCAGAACTTTATGAAAAGCAACTGAAGGCCTTACCTGGTTTAAAGGGGATCGATGTGGACAGCTTGGAGCGAACTTCTGGAGTGAAACAGGTTGATGGTCCTGCTCATGTTGGGGTCACTGAATCACATGAGGAAGGAAAGAATAAGACAAAAGCTAAGAAAAAGAGAAAGAGAAAACCAAGGTATCCAAAAGGGTTTGACCCCGCAAATCCAGGTCCTCCCCCGGATCCTGAAAGGTGGCTCCCCAGGCGGGAGAGATCAACCTATAGGCCCAAGAGGAAGGACAAAAAAGCTGCTCAAGTGAGAGGCGCTCAGGGTGCTGTAGTCCGAGAAAAGCATGATGTTGGTTCTTCTTCCAACAACTCTAATCCGAAAGCAAGCCCGGCTGCTGCCTCTAAAGGAAGTAGTGGACCTTCTCAGCAAAGCAAGCCTTCATCCAAGTCAAGAAAGAAGTCAAGGAATTAA 1995 0.4617 MAPKAKPVVAAAASQPPPPLEDLFTALDRHINSFSFDNAVKLADQILAVAPADEDALRCKVVALIKDDRLDLALSAIRSSRTHLPDFDFLKAYCLYRQNKLNEALESLKTQERTTETMLLEAQILYRLGKMDACLDIYQKLQNSKIDNLEINCVASLVMGGRSSEVQGLLDSLRVKATSSFELAYNTACSLIERKKYTDAEQLLLSGRRIGQEVLMEDNLPDDEIESELAPLAVQLAYVQQLLGCKQDAIEAYIDIIKRDMADESSIAVAVNNLVSLRGPKDVSDSLRKLDRLKDKEAQNFRLASELDLKLPAKEKEAIYANRVLLLLHANKIDQGRELVSRLPDMFPESVIPILLQAAVLVRENKAGKAEELLGQFVGKYPEKSKVVHLARAQVAAAAGHPHIAADSVAKISDIQHMPATVATLVSLKERAGDIEGASAVLDSAIKWWSNAMTEDNKLNIIMQEAASFKIRHGNEDDAAKLYEELVKSQGGIEALVGLVTTVARTDVDKAELYEKQLKALPGLKGIDVDSLERTSGVKQVDGPAHVGVTESHEEGKNKTKAKKKRKRKPRYPKGFDPANPGPPPDPERWLPRRERSTYRPKRKDKKAAQVRGAQGAVVREKHDVGSSSNNSNPKASPAAASKGSSGPSQQSKPSSKSRKKSRN* 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5555 664 Pfam SRP72 RNA-binding domain 553 601 IPR013699 GO:0006614|GO:0008312|GO:0048500
Amo13g5555 664 Gene3D Tetratricopeptide repeat domain 20 166 IPR011990 GO:0005515
Amo13g5555 664 Gene3D Tetratricopeptide repeat domain 174 517 IPR011990 GO:0005515
Amo13g5555 664 SUPERFAMILY TPR-like 37 487 IPR011990 GO:0005515
Amo13g5555 664 PANTHER SIGNAL RECOGNITION PARTICLE 72 15 662 IPR026270 GO:0006614
Amo13g5555 664 MobiDBLite consensus disorder prediction 535 664 - -
Amo13g5555 664 MobiDBLite consensus disorder prediction 624 655 - -
Amo13g5555 664 PIRSF SRP72 10 664 IPR026270 GO:0006614
Amo13g5555 664 Pfam Putative TPR-like repeat 56 155 IPR031545 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5555 Amo-Chr13 157104495 157107913 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5555 K03108 - gmx:100810125 942.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g5555 13 157104495 157107913 Amo13g5555 13 157104495 157107913 ECH