Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5549 ATGTTTACTCTTCTGCTGTCTTCTCTGAACTTTCCAGTGTTTCCTTCAACTTCAACCATGGCCATTGTGGATACTCTGCTTGTAACAGCCAATGTGGCATTCTTCTATGCAATTCTGATATGGCTGCTTCTTCACACTTTGAGACAAAGCAAGCTTCGACGTGCTGTGTTTCTCCAACAAGGACCAAAGTTCTTCTCCATTATCACTCTCCTATTCAATTTTATTCTTACCCTTTTAACTATAGCTTTTGCAGTTCATGAATATAGGACTAATAAAATAGTGAGATATAGTTCTGTTACATTTGCTCTAACATGGGTTATGGCAAGCTTGGTTTCATTCTATTCAATGAAGAAGACAACAAGAGACAACAAAAGATTCCCTTTTGTTCTGGTTCTCTGGTGGGTCTGGGCCAGTATCATAGAAGCAATCTCAGTTTCTATTGGACTAATGAAGAACAACTTTGAATACTTGGACTTCTGGAATTTCTTGTCTGAGGATGATAACATAGTTGGTGTGGTTTCCTTGCCTATGTTGTTGTTGCTTTTGTGTTTGAATTTATGTGCAAGAGAAGAACAACACAACACTGACATGGAACAGCTCTTGGTTCACCCTGGAGAAGAAGAAGATGATGATGAAGATGGAGAGAACTTCACAACTGCAGGCATTTGGAGCCAACTCACATTTCGATGGCTGAATCCCATTTTTAGAAAGGGTCGAGTTCAGAAGCTTGAGCTTGCTCACATTCCTGATGTTCCTCATTCTGAAACTGCAGAAAATGCTTCTTCCTTATTGGAAGAATCGCTTCGCAAACAGAAACTTGAAGGGGCTTCCTTGGCTAAAGCTATAACCAGTTCTGTGTGGAAGTCCTTGGCTTTAAATGCAGTTTTTGCCGGGGTTAATACAATTGCATCTTATATGGGTCCATTGTTGATTACATACTTTGTCAATTTCTTGGTGGATGATAATTCCAATTCAAGCATCCAATGTGGCCTCATTCTTGCATTCATATTCTTCCTCTCAAAGACATTGGAGTCACTGAGCCAAAGACAATGGTACTTTGGTGCTCAGAGAATTGGAATTCGAGTGCGCGCGGCTCTTATGACTCTAATTTACAGCAAGTCCTTAATGATCAAGTGTGCAGGGCCAACCCATGGAAAAATCATAAACTTGGTGAATATGGATGTTGAAAGAATTGGGGATTTCTGCTGGTACATTCATGGAGTTTGGTTGCTTCCAGTTCAGGTTATTTTGGCCTTAGTGATATTGTACATAAACTTGGGATTCTTGCCTTCAATTTCTGCACTTGCTGTCACCATTTTGGTTATGGTGTGTAACACACCTTTGGCCAATATGCAAGAAAAATTACACTCCAAGATCATGGAAGCTAAGGATACAAGAATCAAGATGACTTCAGAGATAATGAAGAACATGAGGATACTGAAATTGCATTCATGGGAATCAACATTCTTACAGAAACTTCTCCAATTGAGAGACACTGAGAAGAGTTGGCTGCAGAAGTACCTCTACACTTGCTCAGCAGTAGCCACTCTTTTCTGGACTTCTCCAACTTTGGTTTCTGTTGTTACTTTCGGCATCTGCATACTGGTGAACACAGAACTGACTGCGGCTACTGTCCTCTCAGCCTTGGCAACTTTTCGGATTCTGCAGGAACCAATCTACAATCTTCCTGAGCTGATTTCTATGATAGCTCAAACAAAAGTCTCTCTTGATCGAATCCAAGAGTTGATCAATGAAGAGGACCAGAACCAGTTTATGAACAAGCACACTTCGAAAGATTCATCAATTGTTATTGAAATCAAGCCAAGTGAATATGCATGGGAAACAAGTGATGGAACCAACAAGAAACCAACAATTCAAATCACAGAAAACTTGAAGATAAAGAAAGGTCAGAAGGTAGCAGTTTGTGGTTCAGTGGGGTCTGGAAAATCAAGCTTACTTTGTTGTATGCTTGGTGAGATTCCATTGGTTTCCGGGACATTGATCAAAGTCTATGGAACAAGAAGTTATGTGCCACAGAGTCCCTGGATTCAATCAGGAACAATAAGAGAAAATATCCTGTTTGGAAAGGAAATGAACAAGGACTTCTATGAAAGTGTTTTGGATGGCTGTGCTTTGCATCAAGATATCAACATGTGGGGTGATGGAGATTTGAATCTTGTGGAGGAGAGGGGCATAAACTTAAGTGGAGGCCAGAAACAACGGATTCAACTCGCAAGAGCTGTTTACAATGATTCAGATATTTACTTCCTTGATGATCCTTTCAGTGCAGTTGATGCTCATACCGGAACTCATTTATTTAAAAAATGCCTTATGCAACTTTTGTCTGAGAAGACAGTTGTTTATGCTACTCATCAACTAGAATTTTTGGAAGCTGCAGATTTAATTCTGGTAATGAAAGATGGAAAAATAGTGGAGTCAGGAAGGTATAAAGAACTCATAGCATGTCCCAACTGTGAATTTGTTCGACAAATGGCTGCTCATGAAGAAACAATAAACCAAATAAATCCATGGCATGAAGAGAACTCTATTAGCTGCAGGCCCCTTCAAAAGAATCAAATTGAAGTTGCTGAAGAGAATCTTCAAGAAAGCATAAGCAATTGGAAGAGAAACAAAGAAGAAGAAGCGGAGACCGGTCGAGTGAAATGGAGTGTTTACTCAACCTTTGTCACATCTGCATATAGAGGATCACTTGTTCCGGTCATTCTTCTCTGCCAGATTCTGTTTCAAGTGATGCAAATGGGAAGCAATTATTGGATTTCTTGGGCTGCAGAACAAACTGGGAGGGTAACCAAAAGGATGCTTATGGGAACATTTGTTCTTCTTTCTGGTGGAAGCTCTATCTTTATACTTGGAAGGACTGTTTTGATGGCAGTGGTGGCTGTTGAGACAGCTCAGCGTCTTTTTCATGGAATGATTACATCTGTTTTCAGAGCACCTGTTTCATTTTTTGATACCACACCTTCAAGCAGAATCCTCAGTAGGTCATCAACAGATCAAAGTACAATTGACACAGACATACCATACAGATTAGCAGGGCTAGTGTTTGCACTAATTCAGTTGTTGAGTATTATCATGCTAATGTCGCAGGTCGCGTGGCAAGTCATCCTTGTGTTTCTTGTGGTGTTTGCTATCTCCATATGGTATCAGGCTTATTACATTACTACTGCCAGGGAATTAGCCAGGATGGTAGGGATCAGAAAGGCCCCAATCTTGCATCATTTCTCAGAATCTATTGCTGGGGCCGCCACGATTCGTTGTTTCAATCAAGAACAAATATTCATGACCAAAATCAAGGATCTTGTTGATGAATACTCTAGAGTAGCCTTTCATAATTATGCCACCATGGAATGGTTGTCAGTCCGGATCAATTTTCTCTTCAATCTAGTCTTCTACTTTGTTCTCATCATCTTGGTTACTCTGCCAAGGTCTGCCATTGATCCCAGCTTGGCAGGTCTGGTAGCTACTTATGGTTTGAACTTGAATGTACTTCAGGCTTGGGTCATATGGAACCTTTGCAATGTTGAGAACAAGATGATATCTGTTGAGAGAATATTGCAATTCTCTAGCATACCAAGTGAAGCACCACTGATAATCCAAGATTGTAGGCCTGAACCAGAGTGGCCTATGGAAGGGAAAATTGAGCTTCAGAATATTCATATTCGGTATGATCCGGCTGGTCCTATGGTTCTCAAAGGTGTCACTTGCACATTCCCGGGGCGAAAGAAGATCGGAGTAGTAGGGAGGACAGGGAGTGGAAAATCAACTCTGGTGCAAGCCCTTTTTCGAGTGGTGGAGCCTTTGGAAGGAAAGATACTAATAGATGGAGTACATATTTCCAAGATTGGTCTGCAGGATTTAAGATCTAAGCTTGGTATAATTCCTCAAGACCCAACCTTGTTTCTAGGTACTGTTAGGACTAACTTGGATCCTCTAGAACAACATGCGGATAAAGAACTCTGGGAGGTTCTCAAGAAGTGCCATCTTGCTGAAATTGTAAGGCAGGATCCAAGACTTCTTGATGCACCAGTGGCTGAGAATGGAGAAAATTGGAGCGTTGGACAAAGGCAACTCGTTTGTCTTGCTAGGCTGCTATTGAAAAAGAGAAGGATTTTGGTTCTAGATGAGGCAACAGCATCTATTGACACTGCAACTGACAATTTAATTCAAAAGACTATTAGAGAAGAAACTAGTGAATGCACAGTGATTACTGTAGCACATAGAATCCCTACAGTTATTGATAATGACTTGGTTTTGGTCCTTGATGAAGGGACAATTGCAGAGTATGATGAACCAGATCAGTTGCTGCAGAACAATACTTCATCTTTCTCAAAGTTGGTTTCAGAATTTTTGAGGAGATCATCCCCCAAGTAG 4392 0.4073 MFTLLLSSLNFPVFPSTSTMAIVDTLLVTANVAFFYAILIWLLLHTLRQSKLRRAVFLQQGPKFFSIITLLFNFILTLLTIAFAVHEYRTNKIVRYSSVTFALTWVMASLVSFYSMKKTTRDNKRFPFVLVLWWVWASIIEAISVSIGLMKNNFEYLDFWNFLSEDDNIVGVVSLPMLLLLLCLNLCAREEQHNTDMEQLLVHPGEEEDDDEDGENFTTAGIWSQLTFRWLNPIFRKGRVQKLELAHIPDVPHSETAENASSLLEESLRKQKLEGASLAKAITSSVWKSLALNAVFAGVNTIASYMGPLLITYFVNFLVDDNSNSSIQCGLILAFIFFLSKTLESLSQRQWYFGAQRIGIRVRAALMTLIYSKSLMIKCAGPTHGKIINLVNMDVERIGDFCWYIHGVWLLPVQVILALVILYINLGFLPSISALAVTILVMVCNTPLANMQEKLHSKIMEAKDTRIKMTSEIMKNMRILKLHSWESTFLQKLLQLRDTEKSWLQKYLYTCSAVATLFWTSPTLVSVVTFGICILVNTELTAATVLSALATFRILQEPIYNLPELISMIAQTKVSLDRIQELINEEDQNQFMNKHTSKDSSIVIEIKPSEYAWETSDGTNKKPTIQITENLKIKKGQKVAVCGSVGSGKSSLLCCMLGEIPLVSGTLIKVYGTRSYVPQSPWIQSGTIRENILFGKEMNKDFYESVLDGCALHQDINMWGDGDLNLVEERGINLSGGQKQRIQLARAVYNDSDIYFLDDPFSAVDAHTGTHLFKKCLMQLLSEKTVVYATHQLEFLEAADLILVMKDGKIVESGRYKELIACPNCEFVRQMAAHEETINQINPWHEENSISCRPLQKNQIEVAEENLQESISNWKRNKEEEAETGRVKWSVYSTFVTSAYRGSLVPVILLCQILFQVMQMGSNYWISWAAEQTGRVTKRMLMGTFVLLSGGSSIFILGRTVLMAVVAVETAQRLFHGMITSVFRAPVSFFDTTPSSRILSRSSTDQSTIDTDIPYRLAGLVFALIQLLSIIMLMSQVAWQVILVFLVVFAISIWYQAYYITTARELARMVGIRKAPILHHFSESIAGAATIRCFNQEQIFMTKIKDLVDEYSRVAFHNYATMEWLSVRINFLFNLVFYFVLIILVTLPRSAIDPSLAGLVATYGLNLNVLQAWVIWNLCNVENKMISVERILQFSSIPSEAPLIIQDCRPEPEWPMEGKIELQNIHIRYDPAGPMVLKGVTCTFPGRKKIGVVGRTGSGKSTLVQALFRVVEPLEGKILIDGVHISKIGLQDLRSKLGIIPQDPTLFLGTVRTNLDPLEQHADKELWEVLKKCHLAEIVRQDPRLLDAPVAENGENWSVGQRQLVCLARLLLKKRRILVLDEATASIDTATDNLIQKTIREETSECTVITVAHRIPTVIDNDLVLVLDEGTIAEYDEPDQLLQNNTSSFSKLVSEFLRRSSPK* 1464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5549 1463 Coils Coil 857 884 - -
Amo13g5549 1463 Pfam ABC transporter transmembrane region 909 1147 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo13g5549 1463 Pfam ABC transporter transmembrane region 292 558 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo13g5549 1463 SMART AAA_5 635 809 IPR003593 -
Amo13g5549 1463 SMART AAA_5 1246 1437 IPR003593 -
Amo13g5549 1463 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 606 832 IPR003439 GO:0005524
Amo13g5549 1463 CDD ABC_6TM_ABCC_D1 292 579 IPR044746 GO:0140359
Amo13g5549 1463 Gene3D - 627 856 IPR027417 -
Amo13g5549 1463 Pfam ABC transporter 1237 1385 IPR003439 GO:0005524
Amo13g5549 1463 SUPERFAMILY ABC transporter transmembrane region 907 1200 IPR036640 GO:0005524|GO:0016021
Amo13g5549 1463 CDD ABCC_MRP_domain2 1218 1438 - -
Amo13g5549 1463 Pfam ABC transporter 630 761 IPR003439 GO:0005524
Amo13g5549 1463 Gene3D ABC transporter type 1, transmembrane domain 869 1201 IPR036640 GO:0005524|GO:0016021
Amo13g5549 1463 Gene3D ABC transporter type 1, transmembrane domain 265 589 IPR036640 GO:0005524|GO:0016021
Amo13g5549 1463 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 629 822 IPR027417 -
Amo13g5549 1463 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 291 571 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo13g5549 1463 CDD ABCC_MRP_domain1 604 809 - -
Amo13g5549 1463 PANTHER OS01G0902100 PROTEIN 127 1461 - -
Amo13g5549 1463 CDD ABC_6TM_ABCC_D2 905 1195 IPR044726 GO:0140359
Amo13g5549 1463 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1212 1446 IPR027417 -
Amo13g5549 1463 SUPERFAMILY ABC transporter transmembrane region 285 586 IPR036640 GO:0005524|GO:0016021
Amo13g5549 1463 ProSitePatterns ABC transporters family signature. 734 748 IPR017871 GO:0005524
Amo13g5549 1463 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 907 1183 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo13g5549 1463 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1220 1454 IPR003439 GO:0005524
Amo13g5549 1463 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 127 1461 - -
Amo13g5549 1463 Gene3D - 1203 1456 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5549 Amo-Chr13 157012883 157018597 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5549 603 858 Calmodulin-binding Proteins AT2G36910 28.723 1.01e-21 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5549 - - adu:107481980 2756.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g5549 13 157012883 157018597 Amo13g5549 13 157012883 157018597 ECH