Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5532 ATGATCATTTCAAAAATGCCTGGATGCATTGCTGGTAAGAAGTGGTTCACAGAACCGAATATGTGTTTTTCTAATTTACCCAATAAGGAAAATCAAACACTTTCTAAGAGCAAGCATTCTGTGCGCTCTGAGTTATCGGATAAGGATGATGATAGCTCGATTCTACCTCGGCTGCCTGATGATGTTTCCAAGTATTGCTTAGCACTTGTGCCTCATTCGGACCTCCCGGCTATGGCCGGTGTTTGTAAGAGATGGAGGTGTTTCATTCAGAGCAAAGAATTTATAATGGTAAGAAAATTGGCTGGCTTGGTTGAGGAATGGCTTTTCCTGTTAACTGCAGATAAAGAAGGGAAAGGAAGCCATTGGGAGGTAGTGGATTGTCAGGGTCAGAATCGTCGATCTCTTCCACCAATGCCTGGTCCAACAAAGGCTGGATTCGGGGTGGTGGTTGTTAATGGGAAGCTACTTGTCATGGCTGGCTATTCAGTTATTGATGGAACTGCCACTGCCTCACCAGAGGTTTACCAATACAATTCTTGTGTCAACAGTTGGAGCAGGTTATCAAACATGAATGTGGCTCGATATGACTTTGCTTGCGCTGAGGTCAATGGCTTGGTGTACGCTGTTGGAGGCAACGGAGTAGATGGCGACAGCCTCTCCAGTGTGGAGGTCTATGATTCAGAAACTGACAAGTGGACATTGATTGAGAGCCTTCGTCGGCCGAGACGAGGTTGCTTCGCGTGTGGATTCGAGGGGAAGCTCTACGTGATGGGTGGAAGGTCGAGTTTTACAATTGGAAACTCAAAATTTGTTGATGTTTACAATCCTGAAAGGCACAGTTGGTGTGAGATGAAAAATGGTTGTGTCATGGTGACTGCTCATGCAGTACTGGGAAAGAAGCTGTTCTGTATGGAGTGGAAGAATCAGAGGAAGTTGGCAATCTTCAATTCAGAGGACAATACATGGAAAATGGAGCCTCTACCTTTGACTGGGAGCTCCAGTATCGGTTTCCGGTTCGGAATTCTTGATGGTAAACTCTTGCTGTTCTCACTGGAGGAGGAACCTACATGCAAAACTTTGTTGTATGATCCAAATGCAGCCCCTGGATCGGAGTGGCAAACAAGTGAGATCAAACCATCTGGGTTATGCTTGTGCAGTGTAACAGTCAAAGCATGA 1176 0.4558 MIISKMPGCIAGKKWFTEPNMCFSNLPNKENQTLSKSKHSVRSELSDKDDDSSILPRLPDDVSKYCLALVPHSDLPAMAGVCKRWRCFIQSKEFIMVRKLAGLVEEWLFLLTADKEGKGSHWEVVDCQGQNRRSLPPMPGPTKAGFGVVVVNGKLLVMAGYSVIDGTATASPEVYQYNSCVNSWSRLSNMNVARYDFACAEVNGLVYAVGGNGVDGDSLSSVEVYDSETDKWTLIESLRRPRRGCFACGFEGKLYVMGGRSSFTIGNSKFVDVYNPERHSWCEMKNGCVMVTAHAVLGKKLFCMEWKNQRKLAIFNSEDNTWKMEPLPLTGSSSIGFRFGILDGKLLLFSLEEEPTCKTLLYDPNAAPGSEWQTSEIKPSGLCLCSVTVKA* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5532 391 MobiDBLite consensus disorder prediction 35 53 - -
Amo13g5532 391 SMART kelc_smart 253 298 IPR006652 GO:0005515
Amo13g5532 391 SMART kelc_smart 154 204 IPR006652 GO:0005515
Amo13g5532 391 SMART kelc_smart 205 252 IPR006652 GO:0005515
Amo13g5532 391 Pfam F-box domain 56 93 IPR001810 GO:0005515
Amo13g5532 391 PANTHER OS02G0202900 PROTEIN 6 391 IPR045887 -
Amo13g5532 391 SUPERFAMILY F-box domain 41 94 IPR036047 GO:0005515
Amo13g5532 391 Pfam Kelch motif 241 286 IPR011498 GO:0005515
Amo13g5532 391 Gene3D - 94 389 IPR015915 GO:0005515
Amo13g5532 391 ProSiteProfiles F-box domain profile. 52 100 IPR001810 GO:0005515
Amo13g5532 391 PANTHER KELCH REPEAT F-BOX PROTEIN 6 391 - -
Amo13g5532 391 Pfam Kelch motif 144 191 IPR006652 GO:0005515
Amo13g5532 391 Pfam Kelch motif 193 238 IPR006652 GO:0005515
Amo13g5532 391 SUPERFAMILY Kelch motif 105 351 IPR015915 GO:0005515
Amo13g5532 391 MobiDBLite consensus disorder prediction 34 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5532 Amo-Chr13 156825339 156828463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5532 58 236 Miscellaneous Gene Families AT4G33900 28.351 2.30e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5532 - - adu:107482114 808.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g5532 13 156825339 156828463 Amo13g5532 13 156825339 156828463 ECH