Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5522 ATGCTGAGGCACCTAATCGCTCACCTGCACCAGCTCCTTCACACATCTTCAACAACTTCCCCAACGTCTCCTTCATCTTCCTTCATCCTTCACCCTTCTTCTCTTCACAATCATCCCAGATGGTCCTTCCTTGATATTGATGATAACTCTGTAGATGACTGCTGTGGCCTTGTAATGGCAGCTGGAAAGTCTGGAAATTTGAGGATGGTGGAACCTCTAAAACATCCATCTACAAAGAAGCCCCGAAGAGATCAGAGCAGGGGGAAATCATCTGGAAGGTCCTCTATGACTGAAGTTATGGAACAACAAATTTGGAAAGATTTTCCAGAGGATTTAATAGAGGCTGTGATTGCTCGACTTCCCATTGCCACATTTTTCCGTTTCCGTTCTGTATGCTGGCGTTGGAATTCCTTGCTGAATTCTCCAAGTTTTTCTCAGCATTGTGCGCAAGTTCAACACGCAAACCCGTGGTTTTATATCATAACCCAAGAGCGTGCAAATTCAGGAGCCATGTACGACCCTTCTATTAAAAAGTGGTATCACCCAACCGTGTCAGCACTGCCCTCAAAGTTGATTCTTTTCCCAGTGGCATCTGCTGGGGGGCTAGTTTGCTTTCTTGAAATTGGTCAGCGAAACTTCTTTGTTTGCAACCCATTGACTCAATCCTTCAAGGAGTTACCTGCTAGGTCAGTTAAGGTCTGGTCTCCGGTTGCTGTAGGGATGACAGCAAATGGGAACTTAACTGGTGCAGGCTACAAGATCCTATGGGTTACTTGTGATGGAGAATATGAGGTTTATGACTCCATGAGGAAGTCTTGGAGCCGTCCAGGAAACATGCCTGTAGGTATTAAGCTGCCATTAGCACTCAACTTCAAGTCCCAATCTATTTCTATTGACAGCACAATTTACTTCATGCATTCGGATCCAGAAGGGATTGTTTCCTATGATATAGCAACTGGGGTTTGGAAACAGTACATAATCCCAGCCCCATTGCATCTAACTGACCACACATTGGCCGAGTGTGATGGCCGGATTATGCTTGTTGGGTTGCTCACAAAAAATGCAGCCACCTGCGTATGCATATGGGAGCTGCAGAAGATGACGCTCTTATGGAAGGAGGTAGACAGAATGCCAAATGAATGGTGCTTGGACTTATATGGGAAGCACATTAAAATGACTTGCCTGGGGAACAAAGGTTTGCTTATGTTGTCCTTGAGATCGAAACACATGAATCGATTGGTTACTTACGACATAGCAAGCAGGGAATGGCTGAAGGTTCCTGGGTGTGTGGCGCCACGTGGAAGAAAGCGGCAGTCTATAGCATGTGGTACTGCATTTCATCCATGCTTAACTGCAGTGGCTTGA 1365 0.4571 MLRHLIAHLHQLLHTSSTTSPTSPSSSFILHPSSLHNHPRWSFLDIDDNSVDDCCGLVMAAGKSGNLRMVEPLKHPSTKKPRRDQSRGKSSGRSSMTEVMEQQIWKDFPEDLIEAVIARLPIATFFRFRSVCWRWNSLLNSPSFSQHCAQVQHANPWFYIITQERANSGAMYDPSIKKWYHPTVSALPSKLILFPVASAGGLVCFLEIGQRNFFVCNPLTQSFKELPARSVKVWSPVAVGMTANGNLTGAGYKILWVTCDGEYEVYDSMRKSWSRPGNMPVGIKLPLALNFKSQSISIDSTIYFMHSDPEGIVSYDIATGVWKQYIIPAPLHLTDHTLAECDGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNEWCLDLYGKHIKMTCLGNKGLLMLSLRSKHMNRLVTYDIASREWLKVPGCVAPRGRKRQSIACGTAFHPCLTAVA* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5522 454 Gene3D - 105 144 - -
Amo13g5522 454 Gene3D - 154 442 IPR015915 GO:0005515
Amo13g5522 454 PANTHER BNAA07G08860D PROTEIN 40 453 - -
Amo13g5522 454 MobiDBLite consensus disorder prediction 73 89 - -
Amo13g5522 454 MobiDBLite consensus disorder prediction 68 97 - -
Amo13g5522 454 PANTHER F-BOX/KELCH-REPEAT PROTEIN 40 453 - -
Amo13g5522 454 SUPERFAMILY F-box domain 104 140 IPR036047 GO:0005515
Amo13g5522 454 SMART fbox_2 108 148 IPR001810 GO:0005515
Amo13g5522 454 Pfam F-box domain 105 144 IPR001810 GO:0005515
Amo13g5522 454 SUPERFAMILY Galactose oxidase, central domain 131 435 IPR011043 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5522 Amo-Chr13 156607177 156610530 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5522 - - gmx:100795488 734.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g5522 13 156607177 156610530 Amo13g5522 13 156607177 156610530 ECH