LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo13g5406	ATGGGTTCTGTAGATGATGATTCGTCGCTTGTGGAACAGGGTCTTCTTCAGGATGAAGAGAGCAGAAGATACACTGGAGATGGCTCAGTTGACTTTAAAGGGAGGCGTGTACTTAAGGAGAATACTGGCAATTGGAGAGCTTGCCCATTTATCCTAGGCAACGAGTGCTGTGAACGTTTGGCTTACTATGGCATTGCAACAAATCTTGTTACCTACCTTACCACCAAACTACATGAAGGAAATGTCTCTGCTGCAAGAAATGTCACCACCTGGCAAGGCACTTGTTATCTTACACCTCTCATTGGAGCTGTTCTGGCTGATGCTTATTGGGGAAGATACTGGACAATTGCTGTTGAAATGGATTCCTCAGGTTCCTATGAGGAAATGGGTTCCTCTGGGAATATGGGTTCCTTTGATGATGCAGCACTAATCGAAGAAGGACCTCTTCTTCAGGATCCATTGGAGAGGCAATATACAGGAGATGGCACAGTTGACTATGAAGGCAACCCAGTTCCTAAGGAGAATACTGGCGGGTGGAGAGCATGTGCATTTATCCTTGGAAATGAGTGCTGTGAACGTTTGGCTTTCTTTGGTATTTTAACAAATCTTGTTACCTATCTTACCAACAAACTACATCAAGGAAATGCCTCTGCTGCAAAAAATGTTACCATCTGGCAAGGCACTTGTTATCTTACAACTCTGATTGGAGCTGTTCTAGCAGATACATATTGGGGAAGATATTGGACAATTGGTGTTTTTTCCACTATTTATTTCTTGGGGCTGTGTATATTGACTCTTTCTGCATCAGTTCCTGCTTTGAAGCCTCCTGAATGCTTGGGTTCTCATTGTCCTCCAGCTACTCCTGCACAATATTTTGTGTTCTACTTTGGTCTCTATGTGGTTGCCCTTGGAACTGGAGGTGTAAAAACATGTGTGTCATCTTTTGGGGCAGATCAGTTTGATGATACTGATCCTAAGGAAAGAATTACTAAAGCATCCTTTTTCAACTGGTATTACTTTTCTATTTACCTAGGTGCTCTTGCGTCAAGCACCTTCATTGTGTGGATTCAAGACAATGCAGGATGGGCTCTTGGTTTTGGCATTCCCGCTTTATTTATGGGAGTATCGATTGTAAGCTTCTTTTTAGGCACACCAATCTATAGGTTTCTAAAACCAGGGGGGAGCCCCATTAAAAGAATTTGCCAGGTTTTGGTAGCATCTGCCCGAAAGCAGGAGTTGGCTGTCCCCGAGGATAGCAGTCTCCTGTATGAGACAGCAGACAAGAAATCTGCTATCGAAGGGAGCCGCAAACTGGAGCATAGTGATGACATGAGACCGTGTACCTTTTACCAGGCTCTATGTGTTGATTATTTGTGCAATATCAGCCGTAAGGATAGGTTTTTCAGGTGCCTCGATAAAGCAGCTATAGTGTCTGATGCTGAGAGCAAAATTGATTATTTTCCTGATCCATGGAGACTCTGCACTGTGACACAAGTTGAGGAACTGAAGATCTTGCTCCGCATGTTCCCAATTTGGGCTTCAGGAATCATTTTTGCTGCTGTCTATTCCCAGATGGCAACCTTGTTTGTGGAACAAGGAACGATGATGAACACAACTATCGGTTCCTTCAAGATCCCTCCAGCTTCCCTCTCATGTTTTGATGTGATAAGTGTTGTTGTGTGGGTCCCCATCTATGACAAGATACTTGTTCCACTTGCCAAGAAAATTAACGGCACGGAGAGGGGAATTTCTGTGTTTTATAGAATGGGAATTGGCCTTCTTATTTCGGTTGCATGCATGTCGGCCGCAGCTGTGGTGGAGATCATGCGTCTGCAGCGTGCGAGAGAGCTCGACCTTATTGACAAACATGTTGCTGTACCCATTAGTGTGCTCTGGCAAATACCTCAATACTTCTTATTGGGTGCATCCGAGGTATTCATGTTCGCCGGACAGGTTGAGTTCTTCTACGATCAATCTCCGGATGCTATGCGGTCTTTATGCACAGCACTGCCACTTGTGAGTTTTGCACTGGGGAACTACTTGAGCTCTTTCATTCTTACCGTGGTAATTCACTTTACGACACAAGGCGGAAAACCGGGATGGATACCGGATAACTTGAACGAAGGTCATCTTGATTACTTTTTCTGGCTTTTAGCTGGACTTAGTTTCTTAAATTTGTTGGTGTACATTGTCACTGCCAAAAAAGAACAAGAAATGGAACATTTGGAGGAACCCATAACACTTTTGGAAGATGGTCTTTTGCAGAATGAAGACTCTATTCACACTGGAGATGGGACAGTGAACATCAAGGGAGAGGTTGCCATCAAGAGCGAAGGTGGGACATGGAAAGCATGCCCCTTTGTTCTAGGTACTTTCTTCTGCGAACGGTTGGCCTATTATGGAATTGCCAGTAATCTTGTCACCTATCTAACAACCAGACTTCATGAAGGGCCTGTTTCTGCAGCAAGAAATGTTACCACCTTTCAGGGAACATGCTACCTTACACCTCTGCTTGGATCCTTCCTTGCTGATGCATACTGGGGAAGATATCGGACAATCGTTGGAATCTGCACATTGACCCTTTCAGCAATCTTTTCAGCTCAAAGTGCTGTATTCTTCCTTGGAATCTATTTGATTGCAGTAGGGACTGGTGGGATCAAGCCATGTATATGGCCCTTTGGAGCAGACCAGTTTGATGATACAGATCATAAGGAAAGAGCAAGTAAAGCATTATTCTTCAATTGGAACTACTTCACTAGCAACATTGGTGCACTCATAGCAACCACCATATTGGTATGGACCGAAGAAAATATAGGATGGGGACTTGGATATGGCATTGCAGCATCGTTTATTGGTATTGGAATGATAGTGTTCTTTCTTGGTACACGTACCTACCGTTTTCTTAGGCCAGGGGGAAGTCCTATTACAAGAATCTGCCAAGTGGTTGTTGCTTCTTTACATAAGAGGAAATTGGAGGTACCTCAAGATACCTCTCTCCTCTATGAAACTGTGGCAGAGAATTCATCTGTTGAAGGAATGAAATCAGATATAGAAAAAGGGAGTGAGGAAGTAACTAAACCTTGGAGGCTTTGCACTGTGACACAGGTGGAAGAGCTGAAGATTCTAATCCGCATGATTCCAATCTGGGCAACAGGAATCATCTTCAGTTCTGTCTATGCTCAAATGTCCTCGCTGTTCATTGAACAAGGGAAAATGATGGACAGGACTATTGGTTCTTTCACAATTCCCGCGGCATCTCTTTCAACTTTTAATATAGTTGGTGTCATCATTTGGGTTCTCATCTATGATAGAGTGATTGTTAAAGTTGCAAGACACTTCACTGGCAATGCAAGAGGCTTCACAGTGTTGCAGAGAATGGGAATTGGCCTGTTTCTCTCCATGACTTGCATGTCAGCTGCAGCTATATTAGAGAGCAAGAGATTACAAATAGCAAGAGAACATGGATTGGTAGATGAAGATGTTTCTATTCCACTTAGCATACTGTGGCAAATACCTCAGTATTTTTTGCTAGGTGCTGCAGAGGTGTTCAACTTTATAGGACAGCATGAGTTCTTCTATGAGGAAGCGCCAGATAGGATGCGAAGTTTCTGCAGCGCATTGGCGCTTCTGACGAATTCACTGGGAAATTACCTGAGTTCTTTTGTTGTCACAATTGTTGCTAGACTCACAAGAAAGGATGGAAGTCATGGATGGCTACCAGATAATTTGAATGAGGGCCATCTTGATTACTTTTTCTGGCTTCTAGCTGCACTTAGTTTCTTAAATATGTTGGTTTACATTGTCTATGCTAGAATGTACAAACAGAAGACATATTGCAGGAACCTTTCTCAAAGGCTTAATTAA	3864	0.4325	MGSVDDDSSLVEQGLLQDEESRRYTGDGSVDFKGRRVLKENTGNWRACPFILGNECCERLAYYGIATNLVTYLTTKLHEGNVSAARNVTTWQGTCYLTPLIGAVLADAYWGRYWTIAVEMDSSGSYEEMGSSGNMGSFDDAALIEEGPLLQDPLERQYTGDGTVDYEGNPVPKENTGGWRACAFILGNECCERLAFFGILTNLVTYLTNKLHQGNASAAKNVTIWQGTCYLTTLIGAVLADTYWGRYWTIGVFSTIYFLGLCILTLSASVPALKPPECLGSHCPPATPAQYFVFYFGLYVVALGTGGVKTCVSSFGADQFDDTDPKERITKASFFNWYYFSIYLGALASSTFIVWIQDNAGWALGFGIPALFMGVSIVSFFLGTPIYRFLKPGGSPIKRICQVLVASARKQELAVPEDSSLLYETADKKSAIEGSRKLEHSDDMRPCTFYQALCVDYLCNISRKDRFFRCLDKAAIVSDAESKIDYFPDPWRLCTVTQVEELKILLRMFPIWASGIIFAAVYSQMATLFVEQGTMMNTTIGSFKIPPASLSCFDVISVVVWVPIYDKILVPLAKKINGTERGISVFYRMGIGLLISVACMSAAAVVEIMRLQRARELDLIDKHVAVPISVLWQIPQYFLLGASEVFMFAGQVEFFYDQSPDAMRSLCTALPLVSFALGNYLSSFILTVVIHFTTQGGKPGWIPDNLNEGHLDYFFWLLAGLSFLNLLVYIVTAKKEQEMEHLEEPITLLEDGLLQNEDSIHTGDGTVNIKGEVAIKSEGGTWKACPFVLGTFFCERLAYYGIASNLVTYLTTRLHEGPVSAARNVTTFQGTCYLTPLLGSFLADAYWGRYRTIVGICTLTLSAIFSAQSAVFFLGIYLIAVGTGGIKPCIWPFGADQFDDTDHKERASKALFFNWNYFTSNIGALIATTILVWTEENIGWGLGYGIAASFIGIGMIVFFLGTRTYRFLRPGGSPITRICQVVVASLHKRKLEVPQDTSLLYETVAENSSVEGMKSDIEKGSEEVTKPWRLCTVTQVEELKILIRMIPIWATGIIFSSVYAQMSSLFIEQGKMMDRTIGSFTIPAASLSTFNIVGVIIWVLIYDRVIVKVARHFTGNARGFTVLQRMGIGLFLSMTCMSAAAILESKRLQIAREHGLVDEDVSIPLSILWQIPQYFLLGAAEVFNFIGQHEFFYEEAPDRMRSFCSALALLTNSLGNYLSSFVVTIVARLTRKDGSHGWLPDNLNEGHLDYFFWLLAALSFLNMLVYIVYARMYKQKTYCRNLSQRLN*	1288

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo13g5406	1287	PANTHER	PROTEIN NRT1/ PTR FAMILY 8.3	771	1276	-	-
	Amo13g5406	1287	PANTHER	PROTEIN NRT1/ PTR FAMILY 8.3	32	118	-	-
	Amo13g5406	1287	Gene3D	MFS general substrate transporter like domains	16	120	IPR036259	-
	Amo13g5406	1287	Gene3D	MFS general substrate transporter like domains	754	1279	IPR036259	-
	Amo13g5406	1287	PANTHER	PROTEIN NRT1/ PTR FAMILY 8.3	166	736	-	-
	Amo13g5406	1287	ProSitePatterns	PTR2 family proton/oligopeptide symporters signature 1.	236	260	IPR018456	GO:0006857\|GO:0016020\|GO:0022857
	Amo13g5406	1287	SUPERFAMILY	MFS general substrate transporter	168	737	IPR036259	-
	Amo13g5406	1287	PANTHER	OLIGOPEPTIDE TRANSPORTER-RELATED	166	736	IPR000109	GO:0016020\|GO:0022857\|GO:0055085
	Amo13g5406	1287	PANTHER	OLIGOPEPTIDE TRANSPORTER-RELATED	771	1276	IPR000109	GO:0016020\|GO:0022857\|GO:0055085
	Amo13g5406	1287	PANTHER	OLIGOPEPTIDE TRANSPORTER-RELATED	32	118	IPR000109	GO:0016020\|GO:0022857\|GO:0055085
	Amo13g5406	1287	Pfam	POT family	853	1239	IPR000109	GO:0016020\|GO:0022857\|GO:0055085
	Amo13g5406	1287	Pfam	POT family	247	702	IPR000109	GO:0016020\|GO:0022857\|GO:0055085
	Amo13g5406	1287	Gene3D	MFS general substrate transporter like domains	152	742	IPR036259	-
	Amo13g5406	1287	SUPERFAMILY	MFS general substrate transporter	779	1276	IPR036259	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo13g5406	Amo-Chr13	154726707	154741826	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo13g5406	135	740	Organic Solute Cotransporters	AT2G02040	64.638	0.0	826

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo13g5406	K14638		-	sind:105174539	1186.02

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Amo13g5406	13	154726707	154741826	Amo13g5406	13	154726707	154741826	ECH