Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5133 ATGGAAAGGAGAAGATGCTCCACCTTTTTAGTGTTGTTATTGACACTCCAAGTGGTGAAGGCTCTGACGGAGGAGGTTCCACTAAGCACGAATTCACGGTGGATAGTAAACCAACAAGGGAAGAGGGTGAAGCTTGCGTGCGTCAATTGGGTGTCCCATCTAGAACCCGTGGTGGCGGAGGGGCTYAGCAAGAAGCCMGTGGATGTGATCTCGAAGGGKATAAAGTCCATGGGCTTCAACTGTGTGAGGCTCACTTGGCCCATTCTRTTGGTCACCAATGACTCCCTCGCTTCTCTAACCGTTAGACAATCATTTCAGAGCCTTGGCCTAACTGATTCCGTTGCTGGCATCCAAGCCAATAACCCCTCCATCATCGATCTCAATCTCATCCAAGCTTTTCAGGCAGTGGTGAAAAGTCTCGGGGACAACGATGTGATGGTGATCTTGGACAACCACATAACCGAACCAGGTTGGTGCTGCAATAACAACGATGGCAATGGCTTCTTCGGCGATAAATATTTCAACCCAGACCTCTGGATCCAAGGCCTCACCAAGATGGCCACTATTTTCAACGGAGTCACCAACGTTGTAGGCATGAGCTTAAGAAACGAGCTTCGTGGCCCTAGACAGAATGTCAACGATTGGTATATGGTGAAAGGAGCGGAAGCGGTTCATGCAGCGAACCCAAATGTGATTGTAATCTTGTCTGGCTTAAGTTTTGACAAGGACTTATCGTTCGTTAGGAATAGAGCAGTGCAAGTGTCTTTTAAGGGGAAACTAGTTTTTGAGGCGCACTGGTATGCCTTCACGGATGGTCAAGCTTGGGTTCAAGGGAACCCCAACCAAGTGTGTGGACAAGTGTCCGCAAACGTCATCACCAATTCTGCTTTCTTGCTGGACCAAGGATGGCCCTTGTTTTTCAGCGAGTTTGGGTTGGACATGAGAGGTACCAATCTTAATGATAATAGGTACATCACCTGCTTCATGGCTCTTGCGGCTGACCTGGACTTCGATTGGGCCTATTGGACTCTTGTTGGCAGTTATTATTTTAGACAAGGCGTTGCTGGAATGGAAGAGTTTTATGGGCTTCTTACTTGGGACTGGGCCAATGTTAGAAATACTACGTTCTTGCAAAGGATCTCTTCCCTACAACTTCCCTTCCGAGGACCAGGCATAACACAAGGTAATCCATACAAAGTGATTTACCATCCTTTGACGGGGCTTTGTGTGACAAGGAAGTCAATACAAGACCCATTGAGGTTGGGCCCTTGTTCTAACTCTGATGGTTGGAAGTATACGCCTCAAAAGATACTAAACGTAATGGGAACTTACTATTGCTTACAAGCGGATCAAGAAGGAAATCCTGCAAAACTTAGCATAATTTGCTCTGCTTCTAACTCTAAATGGGAAATGATCTCAGACTCAAAGTTGCACCTCTCCTCTAACCTCACCGATGGTTCTAAGGTTTGTTTGGATATAGATTCCAACAATAATATTGTGACCAATGCTTGCAAATGCTTGAGCACAGATCATACTTGTGACCCTGGAAGCCAATGGTTCAAACTTGTTGACACTGGAATGTTTAGCAGAACATACCAACTACAAGAAAGCCATAAAATAAAGGTGATCGATACTGGCGAGCCTTTATCTGAAATCTCAGATTCTCCATGGTTACTTTATAGAGGAGTTAAACCCGAGAACAAGCAAGCATCAGATGACAGTACAATGACCAAACAAATTCGTGCCACTCATGCTCCTGTTGATGATGAACGCATTGATGTTAGGCCTCTTCTTAATGTGGTTCAACACATTTTCAACTCTGCTGCTTCTATCATCCCTGGCATTGTTCAGATATCTTGCAAGTGTTTGAGTGGTGGAGATGCACATGCCACAACCATGGGGATACTAAGCATGCTGTCAAGGTATTCATGGGAGGCCAAGGTGGTGATAGCATTGGCRGCATTCGSGACCAACTTTGGCAAGTTCTGGCTTCTGGCTCAGGTTCATGCCACCAACCCTCTTGCCAGGTCTGTTGCAATGTTGAARCACATCCATGAAACGCTGGAACAAGTGAATGAATTGGGACCCAAGTTTGAAGCAATCAGCCACCTTCTCAAGGCCATGTTGGATGTAACCAACTACATTATGCAGTTCCATGACCTTCCCTCTCAGTACATTGACCCTGAAGCACCAGAGACGCTAGCTGCCTCCAATCTTATTCCAAGTGCTGTCTATTGGACCATTCGGAGTATCATCGCCTGCGCAACACAGATTCTAGGCATCATTGGCCTCGGTCAAGGATTCATGTCATCAACAATAGAGACTTGGGAACTTTCCAGTTTGGCTCATAAGCTCAGTAACATAAACAGCCACCTTCTTAAGCAACTTGACCTCTGTCGTCAACATTTAGATGATAACAAACAACGAGAAGCATTTGAAACACTTCAGATCCTTTTTCAGACATCCCACCCTGACAACATGAAGATTCTCAAAGCCTTGATTTACAACAAGGATGATATGTTGCCATTGTTTGATGGCTCTACCAAACAACGGGTTAGCATTGAGGTGCTGCGGAAGAAAATTGTGTTACTCTACATAACAGACCTCCATCATATTTCTGATCAAGAAATCATGATCWTTGAMCAAATGTATCAAGAATCACGCCAGGAATCGAGCAGGTTTGAGAGCCAATACGAATTAGTTTGGATCCCAATTGTGGATAAGGGAACCCCATGGACAGAAGAGAAACAAAACAAGTTTGTGAAGCTGCAATCTATGATGACTTGGTACTCACTCTACGACCCTTCCATGTTGGAGCCAGCAACCATCAGGTACATAAAAGAGGTGTGGCTTTTCAATAATGYCAAGCCAATAATTGTAGTTCTGGATCAGCAAGGAAAGGTTGTTAACCTGAATGCAATACACATGATGTGGATTTGGGGAAGCTTGGCTTATCCTTTCTCCAGTTCAAGGGAGGAAGCATTGTGGAAGCAAGAATCATGGCGGCTTGAACTGTTGGCAGATACAATWCATCCATCTCTCTATGATTGGATAGCACAAGGCACATACATATGCTTGTAYGGAGGGGACGACATAGAGTGGATTCGGAAGTTCACAAGGAAGGCACGATCACTGGCAGAAACTCTCAAGTTACCACTGGAGATGATCTATGTAGGGAGAAGCAACCCAGGAGAAAAGGTTCGAAAAATCAACACGGTCATYGAAGAAGAAAAGTTAAGCAACACACTCCCTGACCCTGGGCTCACCCTTATATGGTTCTTCTGGGTTAGGCTGGAGAGCATGTGGCACTCAAAACTGCAGCAGGAAAAAAAAGTGGAAAATGATGAGATAATGCAGGAGATAATGAGGATTCTAGGCTTTGACAGCAGTGAGCAAGGGTGGGTTGTGATGAGCAGAGGCACAGAGAATATGATGGCAAAGGGAAAGGGAGACACATTCCTGAATTGCCTCAATGACTATGATCAATGGAAGGACAAGGCAGAGGACAAGGGGGTTTTGCCTGCAATGGATGATTATATTCAAGGATTACAAACCCCACATCATTGTAATCGCTTGATACTGCCGGGAACCAATGGCAGAATCCCAGATAAGGTGGTTTGTGTCGAATGCGGCCGTCCCATGGAAAAGTTCTACATGTATCGCTGCTGCACAGACTGA 3678 0.4508 MERRRCSTFLVLLLTLQVVKALTEEVPLSTNSRWIVNQQGKRVKLACVNWVSHLEPVVAEGLSKKPVDVISKGIKSMGFNCVRLTWPILLVTNDSLASLTVRQSFQSLGLTDSVAGIQANNPSIIDLNLIQAFQAVVKSLGDNDVMVILDNHITEPGWCCNNNDGNGFFGDKYFNPDLWIQGLTKMATIFNGVTNVVGMSLRNELRGPRQNVNDWYMVKGAEAVHAANPNVIVILSGLSFDKDLSFVRNRAVQVSFKGKLVFEAHWYAFTDGQAWVQGNPNQVCGQVSANVITNSAFLLDQGWPLFFSEFGLDMRGTNLNDNRYITCFMALAADLDFDWAYWTLVGSYYFRQGVAGMEEFYGLLTWDWANVRNTTFLQRISSLQLPFRGPGITQGNPYKVIYHPLTGLCVTRKSIQDPLRLGPCSNSDGWKYTPQKILNVMGTYYCLQADQEGNPAKLSIICSASNSKWEMISDSKLHLSSNLTDGSKVCLDIDSNNNIVTNACKCLSTDHTCDPGSQWFKLVDTGMFSRTYQLQESHKIKVIDTGEPLSEISDSPWLLYRGVKPENKQASDDSTMTKQIRATHAPVDDERIDVRPLLNVVQHIFNSAASIIPGIVQISCKCLSGGDAHATTMGILSMLSRYSWEAKVVIALAAFXTNFGKFWLLAQVHATNPLARSVAMLKHIHETLEQVNELGPKFEAISHLLKAMLDVTNYIMQFHDLPSQYIDPEAPETLAASNLIPSAVYWTIRSIIACATQILGIIGLGQGFMSSTIETWELSSLAHKLSNINSHLLKQLDLCRQHLDDNKQREAFETLQILFQTSHPDNMKILKALIYNKDDMLPLFDGSTKQRVSIEVLRKKIVLLYITDLHHISDQEIMIXXQMYQESRQESSRFESQYELVWIPIVDKGTPWTEEKQNKFVKLQSMMTWYSLYDPSMLEPATIRYIKEVWLFNNXKPIIVVLDQQGKVVNLNAIHMMWIWGSLAYPFSSSREEALWKQESWRLELLADTIHPSLYDWIAQGTYICLYGGDDIEWIRKFTRKARSLAETLKLPLEMIYVGRSNPGEKVRKINTVIEEEKLSNTLPDPGLTLIWFFWVRLESMWHSKLQQEKKVENDEIMQEIMRILGFDSSEQGWVVMSRGTENMMAKGKGDTFLNCLNDYDQWKDKAEDKGVLPAMDDYIQGLQTPHHCNRLILPGTNGRIPDKVVCVECGRPMEKFYMYRCCTD* 1226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5133 1225 PANTHER SIEVE ELEMENT OCCLUSION-RELATED 569 617 - -
Amo13g5133 1225 Pfam Sieve element occlusion C-terminus 990 1224 IPR027944 -
Amo13g5133 1225 SUPERFAMILY Ricin B-like lectins 394 522 IPR035992 -
Amo13g5133 1225 Gene3D Glycosidases 25 384 - -
Amo13g5133 1225 PANTHER SIEVE ELEMENT OCCLUSION-RELATED 616 1224 - -
Amo13g5133 1225 Pfam Cellulase (glycosyl hydrolase family 5) 68 344 IPR001547 GO:0004553|GO:0071704
Amo13g5133 1225 PANTHER PROTEIN SIEVE ELEMENT OCCLUSION B-LIKE 616 1224 IPR039299 GO:0010088
Amo13g5133 1225 SUPERFAMILY (Trans)glycosidases 27 375 IPR017853 -
Amo13g5133 1225 CDD RICIN 398 504 IPR000772 -
Amo13g5133 1225 PANTHER PROTEIN SIEVE ELEMENT OCCLUSION B-LIKE 569 617 IPR039299 GO:0010088
Amo13g5133 1225 Pfam Sieve element occlusion N-terminus 616 823 IPR027942 -
Amo13g5133 1225 Pfam Sieve element occlusion N-terminus 571 614 IPR027942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5133 Amo-Chr13 151021516 151027373 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5133 27 523 Glycoside Hydrolase AT1G13130 60.239 0.0 650
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5133 - - gmx:100799626 979.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g5133 13 151021516 151027373 Amo13g5133 13 151021516 151027373 ECH