Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5119 ATGAGCAGCATGCGGATTCAATCGTGGCTAAAAACATGCTCCACGGCCACCGCTACGCAGCAATCCACCATCCCCATAGACACAAGTAGCAGCAGGTATTATTCCTCCGGATCCGAAGCTCTCAGTTCTTCCACAACCTCTCAAGAAAGCAGTAGCAGCACCACCCCCACCCTACTCAGCGACCTCTCCATACAGACCCTCCCATCCCTTCCTTCTCTTCAGAAACTCACACCTCAAAACCTTAACTTCTCAGTCTCCCACCATTGCCAAACCACCTTCACACTGCAACCTCAACGGGAACACTCTCGCCCCGTCACCTCCCTCGCTCTCCACGGCCACCTCCTCTACGCTGCCACCGCACACCAAATCAATGTCTACGATCTTAACACGTGCGCCACCCTCCAAACTCTAAACTCAGAATATCCGTCTTCAGGTTCCACCAAGGCCATCACCTTCTGCAATGGAATGGTCTTCACCACCCACCAAGACTGCAAGATCCGCGTATGGAACTCTAATAAACACCGCATGTTAACTGCTCTTCCAACCACCAACGACCGTCTACGCCGTTTCCTCTTCCCCAAGAACTACGTCACGGTGCGCCGCCACCACAAGCGGTTATGGATTGAGCACGCAGACGCCGTTACCGGACTCGCCGTCTCAAAATTTAACGATTTTATATACTCCGTTTCATGGGATAAAACCCTCAAGGTGTGGCGAGTCTCGGACCTACGTTGTTTGGAGTCAGTGAAGGCTCACGAGGATGCGGTCAACGCGGTCGCAGTGTCCAAAGATGGAACCGTCTATACTGGATCCGCAGACAGGAGAATAAGGGTCTGGGCAAGAGCCAACGGGGAGAAGCGTCACGCGCTGGTGGCGACGTTGGAGAAGCACCGTTCAGCGGTTAATGCGCTTGCGTTAAATGACGATGGTTCGGTTCTATTTTCGGGTGCGTGCGACCGTTCCATATTGGTGTGGGAGAGAGAGGATAGCGCCAATCACATGGTGGTTAGTGGGGCCCTCAGGGGACACCAGAAGGCTATACTGTGCTTGATTAACGTCTCTGATTTGTTGCTGAGTGGGTCAGCTGATCGGACGGTCAGGATTTGGAAGCGGGGTTTTGATGGGCAGTTCTGCTGCCTGGCGGTTCTTGACGGTCACCGGAAACCAGTGAAGTCGTTAGCAGCATCAGTACAAGTGCGTCATCAAGGTGAAGATTCCCAAAACGATATCGTTTCGGTCTTCAGTGGATCACTTGATGGCGAGATCAAGATTTGGAAGGTTTCCTTAGCTTCACTACCAACGGACCTTCTCAGAAAATGA 1320 0.5258 MSSMRIQSWLKTCSTATATQQSTIPIDTSSSRYYSSGSEALSSSTTSQESSSSTTPTLLSDLSIQTLPSLPSLQKLTPQNLNFSVSHHCQTTFTLQPQREHSRPVTSLALHGHLLYAATAHQINVYDLNTCATLQTLNSEYPSSGSTKAITFCNGMVFTTHQDCKIRVWNSNKHRMLTALPTTNDRLRRFLFPKNYVTVRRHHKRLWIEHADAVTGLAVSKFNDFIYSVSWDKTLKVWRVSDLRCLESVKAHEDAVNAVAVSKDGTVYTGSADRRIRVWARANGEKRHALVATLEKHRSAVNALALNDDGSVLFSGACDRSILVWEREDSANHMVVSGALRGHQKAILCLINVSDLLLSGSADRTVRIWKRGFDGQFCCLAVLDGHRKPVKSLAASVQVRHQGEDSQNDIVSVFSGSLDGEIKIWKVSLASLPTDLLRK* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5119 439 ProSiteProfiles Trp-Asp (WD) repeats profile. 249 289 IPR001680 GO:0005515
Amo13g5119 439 CDD WD40 99 426 - -
Amo13g5119 439 Gene3D - 286 435 IPR015943 GO:0005515
Amo13g5119 439 ProSiteProfiles Trp-Asp (WD) repeats profile. 207 248 IPR001680 GO:0005515
Amo13g5119 439 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 15 431 IPR045182 -
Amo13g5119 439 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 249 279 - -
Amo13g5119 439 ProSiteProfiles Trp-Asp (WD) repeats profile. 294 335 IPR001680 GO:0005515
Amo13g5119 439 SMART WD40_4 86 127 IPR001680 GO:0005515
Amo13g5119 439 SMART WD40_4 333 370 IPR001680 GO:0005515
Amo13g5119 439 SMART WD40_4 242 280 IPR001680 GO:0005515
Amo13g5119 439 SMART WD40_4 130 170 IPR001680 GO:0005515
Amo13g5119 439 SMART WD40_4 200 239 IPR001680 GO:0005515
Amo13g5119 439 SMART WD40_4 287 326 IPR001680 GO:0005515
Amo13g5119 439 SMART WD40_4 376 426 IPR001680 GO:0005515
Amo13g5119 439 ProSiteProfiles Trp-Asp (WD) repeats profile. 340 370 IPR001680 GO:0005515
Amo13g5119 439 Pfam WD domain, G-beta repeat 378 426 IPR001680 GO:0005515
Amo13g5119 439 Pfam WD domain, G-beta repeat 244 279 IPR001680 GO:0005515
Amo13g5119 439 Pfam WD domain, G-beta repeat 209 238 IPR001680 GO:0005515
Amo13g5119 439 Pfam WD domain, G-beta repeat 339 370 IPR001680 GO:0005515
Amo13g5119 439 Pfam WD domain, G-beta repeat 291 325 IPR001680 GO:0005515
Amo13g5119 439 PRINTS G protein beta WD-40 repeat signature 226 240 IPR020472 -
Amo13g5119 439 PRINTS G protein beta WD-40 repeat signature 357 371 IPR020472 -
Amo13g5119 439 PRINTS G protein beta WD-40 repeat signature 413 427 IPR020472 -
Amo13g5119 439 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 340 370 - -
Amo13g5119 439 PANTHER F21J9.19 15 431 - -
Amo13g5119 439 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 294 326 - -
Amo13g5119 439 SUPERFAMILY WD40 repeat-like 95 428 IPR036322 GO:0005515
Amo13g5119 439 Gene3D - 82 197 IPR015943 GO:0005515
Amo13g5119 439 MobiDBLite consensus disorder prediction 37 57 - -
Amo13g5119 439 Gene3D - 198 285 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5119 Amo-Chr13 150747504 150749205 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5119 243 426 Acyl Lipid Metabolism Gene Families AT3G18860 28.796 5.34e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5119 - - lang:109361739 569.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g5119 13 150747504 150749205 Amo13g5119 13 150747504 150749205 ECH