Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5118 ATGGGAAACTTGGACCCCACGGCCGAGGAGTTCAGGCCCAGAAACTATACCCACGGAGCTCCGCCTCCAACTCTTCTGAGGCCACCGGCACCACCTCATTCTCAGCCGTGGTACCCTTACTTAGGTCATCAAGTTGGGGTTTGGTGTCCCACGTCATCTCCTACGAGGTCGCTGATGCTAGGCTTGGTACCCTCCGGAACGGTGGTTTCAGAAGCATGGTTGATGAGGGAGCTTGGAGCGTTCGGGGACGTGAGAGGGGTTCGGATGGAAGGGGTTGGTGAGGGAATGGTGATTGCCATGGTTGACTTCTATGACCTCCGACACGCGGAGGCTGCGTTCACCGCCATTCTGGGCCACCACATGAACATGCATGACTACGCCATGGCGGGTGGTGTGTTGTGGGCACAGTACATGGTGCCCTCATGTGATGATGGGGATAATCAAGGGACGCTGCTGATTTTTAATTTGGATTTACATATGGACGCTATCGCTGTCACTAGTATCTTCCAGCCTTTTGGTGCTGTAAAGGAGGTGAGGCATACCCCACTGAAAAAGAACCAAAGATTCGTAGAGTTCTTTGACATAAGAGACGCAGCAAGGGCTTTGAAGCACATGAATGGCAACCACATTCATGGGAAACCCCTCATTATTGAATTCGGACGGCCAGGAGGAGGACAGTACCGGAAATCAAGTGTTGTTACCAAGGGGGGTTGTTATGATGATAAAGATAATCCTAGTGAAGAATTAGTGGGGAATAGTGGGGGCGAAGAAGAGAGAAACAACCGGTGTAACGATGAGTCCATTGTCGGAGACACGAAGCAGCCAAGTAGGCGTCATAGGAAGGGAAAGCATGCAAAGAAGCAGCATCATCATGATGAAACTCGCCGCTTCTTAATCTCTGCACATGATGGAGACTCTAGAACAACCGTCATGATTAAGAACATACCTAATAAGTACAGCCAGAAGCTACTGTTGAGCATGTTGGATAACCACTGTAATCATTGCAACGAGAAGATTCGGGAAGGCGGCCGTGACCACCAGCCCTTCTCCTCCTATGACTTCCTCTACCTTCCAATTGATTTCAAGAACAAGTGCAATGTGGGATACGGGTTTGTAAACATGACGTCTCCAGAGGCAACAATGAGACTCTACAAGGCCTTCCATGGCCAACGTTGGCAAGTTTTCAATTCAAGAAAAATTTGCGAGGTTACCTACGCCAGGGTCCAGGGATTGGAAGCATTGAAGGAGCATTTCAAGAAGTCCAAGTTGGGATACGAGATGGAGAATTGCCTGCCAGTGATGTTTTCACCTCCTCGAGATGGGAGGCAGCTGACAGAGCCACTTGCAATAGTTGCTCATGCTCATCACCAATCACTCATTGTTAGTAGTAGTACCCAAAGTGACGGCGTTGAAGGTCAATCATCATCATAA 1431 0.4941 MGNLDPTAEEFRPRNYTHGAPPPTLLRPPAPPHSQPWYPYLGHQVGVWCPTSSPTRSLMLGLVPSGTVVSEAWLMRELGAFGDVRGVRMEGVGEGMVIAMVDFYDLRHAEAAFTAILGHHMNMHDYAMAGGVLWAQYMVPSCDDGDNQGTLLIFNLDLHMDAIAVTSIFQPFGAVKEVRHTPLKKNQRFVEFFDIRDAARALKHMNGNHIHGKPLIIEFGRPGGGQYRKSSVVTKGGCYDDKDNPSEELVGNSGGEEERNNRCNDESIVGDTKQPSRRHRKGKHAKKQHHHDETRRFLISAHDGDSRTTVMIKNIPNKYSQKLLLSMLDNHCNHCNEKIREGGRDHQPFSSYDFLYLPIDFKNKCNVGYGFVNMTSPEATMRLYKAFHGQRWQVFNSRKICEVTYARVQGLEALKEHFKKSKLGYEMENCLPVMFSPPRDGRQLTEPLAIVAHAHHQSLIVSSSTQSDGVEGQSSS* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5118 476 MobiDBLite consensus disorder prediction 240 275 - -
Amo13g5118 476 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 149 222 IPR000504 GO:0003723
Amo13g5118 476 MobiDBLite consensus disorder prediction 236 300 - -
Amo13g5118 476 Pfam RNA recognition motif 2 307 419 IPR007201 -
Amo13g5118 476 MobiDBLite consensus disorder prediction 276 291 - -
Amo13g5118 476 Gene3D - 240 420 IPR012677 -
Amo13g5118 476 SUPERFAMILY RNA-binding domain, RBD 149 391 IPR035979 GO:0003676
Amo13g5118 476 SMART rrm1_1 150 218 IPR000504 GO:0003723
Amo13g5118 476 PANTHER RNA BINDING PROTEIN 257 462 - -
Amo13g5118 476 PANTHER RNA BINDING PROTEIN 27 231 - -
Amo13g5118 476 PANTHER TERMINAL EAR1-LIKE 1 257 462 - -
Amo13g5118 476 PANTHER TERMINAL EAR1-LIKE 1 27 231 - -
Amo13g5118 476 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 153 215 IPR000504 GO:0003723
Amo13g5118 476 Gene3D - 141 234 IPR012677 -
Amo13g5118 476 CDD RRM3_EAR1_like 307 410 IPR034458 -
Amo13g5118 476 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5118 Amo-Chr13 150728080 150730036 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5118 - - adu:107481599 952.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g5118 13 150728080 150730036 Amo13g5118 13 150728080 150730036 ECH