Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4827 ATGAGTAACCAGAGGAAGAGAAATTTTCAGATAGAAGCTTTCAAGCATAGGGTTGTCATAGATCCGAAATATGCCGACAAGACATGGAAGATTCTCGAACATGCTATTCATGAGATTTACAATCACAACGCCAGTGGTCTCAGCTTTGAAGAGCTTTACAGAAATGCATACAATATGGTGCTTCACAAATTCGGTGAGAAGCTGTATTCAGGACTGGTTGCTACCATGACTGGACATCTAAAAGAAATAGCCAAATCTGTTGAAGCTGCTCAAGGAGGTTCCTTTCTGGAAGAACTGAACAGAAAATGGAATGATCATAATAAGGCATTGCAAATGATTAGAGACATACTTATGTACATGGACAGGACTTATATACCAAGCACCCAGAAGACCCCTGTTCATGAACTCGGCTTGAACCTTTGGAGAGAAATCGTTATTTATTCCAATCAGATCAGGAATCGGTTACTGAACACACTTCTGGAATTAGTACATAGTGAACGCACTGGGGATGTTATTGATAGAGGGATAATGAGAAATATAACAAAGATGCTCGTGGATTTGGGTCCTTCTGTTTATGTGCATGAATTTGAACTGCATTTTCTTCATGTTTCAGCTGAGTTCTACCGGGTAGAATCCCAGAAATTCATTGAGTGTTGCGATTGTGGTGATTATTTGAAGAAAGCTGAGAGGCGTCTGAATGAAGAAATAGATAGAGTGAGCCATTACTTGGATCCCAGGACTGAAAAGAAGATCACTAATGTGGTGGAGAAGGAGATGATTGAAAATCACATGCTTAGATTAATCCATATGGAGAATTCTGGATTGGTACACATGTTTTCTGATGATAAATATGATGATTTGGGTAGAATGTATAATTTGTTCCGTCGTGTTCCCGATGGTCTCTCAAAAATTCGAGAAGTCATGACTGAACACATCAAAGAAACCGGCAAGCAGCTTGTTAATGATCCTGAAAGGTTGAAGGATCCTGTAGAATTCGTGCAGAGGCTCTTAGATGAGAAGGACAAATATGACAAGATTATCAACTTTGCATTTAACAATGACAAATCTTTCCAGAATGCTTTGAATTCCTCCTTTGAATATTTCATTAACTTGAACCCTCGATCTCCAGAGTTTATTTCGCTGTTTGTTGATGATAAACTTCGTAAAGGTCTGAAAGGGGTTAGTGAGGATGATGTAGAGGTTACCCTTGACAAGGTGATGATGCTATTCCGTTACTTGCAAGAAAAGGATGTTTTTGAGAAGTATTACAAACAGCATCTGGCAAAGCGACTTCTGTCAGGAAAAACCGTTTCTGATGATGCAGAGAGAAGTCTCATAGTTAAGCTCAAGACGGAATGTGGTTACCAGTTTACATCCAAATTAGAGGGCATGTTTACAGACATGAAAACCTCCCAGGACACTATGCAGGGCTTTTATGCCAGCCACCCCGAACTTGTTGATGGTCCTACACTTACTGTACAGGTCCTGACAACTGGGTCGTGGCCAACTCAGTCCAGTGTTACGTGCAACCTGCCAGCCGAAATGTCTGCCCTTTGTGAGAAGTTTCGATCATATTACCTCGGAACCCACACCGGCCGGAGATTGTCCTGGCAAACTAATATGGGCACTGCAGACTTAAAAGCAACCTTTGGGAAAGGTCAGAAGCATGAACTAAACGTATCCACTTACCAAATGTGTGTTCTTATGCTTTTTAATAATGCGGACAGACTTAGCTACAAGGAGATTGAGCAAGCGACTGAGATTCCTGCTTCAGATCTTAAGAGATGCCTGCAATCGTTGGCTTTAGTTAAAGGAAGAAATGTCCTTAGGAAAGAGCCTATGAGTAAAGATGTTGGGGAGGATGATGCATTCTTTGTTAATGACAAGTTCAGTAGCAAACTATACAAGGTGAAAATAGGAACTGTAGTTGCACAAAAGGAATCGGAGCCTGAGAAACAGGAAACTCGACAGAGAGTGGAGGAGGACCGGAAGCCACAGATTGAAGCAGCCATAGTGAGGATCATGAAATCTAGGAAGCAACTTGATCATAATAACCTTATAGCCGAGGTCACAAAGCAGTTGCAATCACGATTTCTTGCGAACCCAACCGAGGTAAAGAAACGGATAGAGTCCCTGATTGAACGGGACTTTTTGGAGAGGGATGAAAATGACAGAAAACTGTATCGGTATCTTGCCTAG 2199 0.4138 MSNQRKRNFQIEAFKHRVVIDPKYADKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMVLHKFGEKLYSGLVATMTGHLKEIAKSVEAAQGGSFLEELNRKWNDHNKALQMIRDILMYMDRTYIPSTQKTPVHELGLNLWREIVIYSNQIRNRLLNTLLELVHSERTGDVIDRGIMRNITKMLVDLGPSVYVHEFELHFLHVSAEFYRVESQKFIECCDCGDYLKKAERRLNEEIDRVSHYLDPRTEKKITNVVEKEMIENHMLRLIHMENSGLVHMFSDDKYDDLGRMYNLFRRVPDGLSKIREVMTEHIKETGKQLVNDPERLKDPVEFVQRLLDEKDKYDKIINFAFNNDKSFQNALNSSFEYFINLNPRSPEFISLFVDDKLRKGLKGVSEDDVEVTLDKVMMLFRYLQEKDVFEKYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSQDTMQGFYASHPELVDGPTLTVQVLTTGSWPTQSSVTCNLPAEMSALCEKFRSYYLGTHTGRRLSWQTNMGTADLKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYKEIEQATEIPASDLKRCLQSLALVKGRNVLRKEPMSKDVGEDDAFFVNDKFSSKLYKVKIGTVVAQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRKQLDHNNLIAEVTKQLQSRFLANPTEVKKRIESLIERDFLERDENDRKLYRYLA* 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4827 732 Gene3D Cullin Repeats 265 372 - -
Amo13g4827 732 PANTHER CULLIN 3 732 IPR045093 -
Amo13g4827 732 Gene3D Cullin Repeats 373 484 - -
Amo13g4827 732 PANTHER CULLIN-3A-RELATED 3 732 - -
Amo13g4827 732 SMART Cullin_Nedd8_2 659 726 IPR019559 -
Amo13g4827 732 Pfam Cullin protein neddylation domain 662 724 IPR019559 -
Amo13g4827 732 ProSiteProfiles Cullin family profile. 374 601 IPR016158 -
Amo13g4827 732 Gene3D Cullin Repeats 145 264 - -
Amo13g4827 732 Gene3D Cullin Repeats 15 143 - -
Amo13g4827 732 SUPERFAMILY "Winged helix" DNA-binding domain 643 732 IPR036390 -
Amo13g4827 732 SUPERFAMILY Cullin homology domain 368 640 IPR036317 -
Amo13g4827 732 SMART cul_2 404 550 IPR016158 -
Amo13g4827 732 Gene3D - 644 732 IPR036388 -
Amo13g4827 732 SUPERFAMILY Cullin repeat-like 22 372 IPR016159 -
Amo13g4827 732 Gene3D Cullin; Chain C, Domain 2 488 643 - -
Amo13g4827 732 Pfam Cullin family 29 630 IPR001373 GO:0006511|GO:0031625
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4827 Amo-Chr13 146717774 146722094 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4827 K03869 - gmx:100795098 1384.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g4827 13 146717774 146722094 Amo13g4827 13 146717774 146722094 ECH