Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4742 ATGGCAACAACTCAAACTCCATTGCTTTTCTCCACCAACAACAATGGCCAACCCTTTATCCATAACAGCCACACGCGCCTCTTCCACTTGCTCAACCACTCCATTGTTGATATCTCTCACTTGAAGCAAATCCATGCTCAACTTCTACGTACCATTCACACCAACCATCATCCACAATCCCTCCTTCTACACAGCAGAATCCTTCACCATTCTTCTCTGCTTGATCTTGGATACGCCACTCGAATTTTTCATCACTTTCAGAATCCCAATTCCTTCATGTGGAACACACTCATAAGAGCCTATGCTAGAACCGCAGACCAAAAACACAAGTCCATGGAACTTTACAAAGCAATGTTAATGATGGAACGAGAACAACAAAGTGCAGCGGTTATTCCTGATAATTACACATACCCTTTTGTATTAAAGGCATGTGCTTACTTGTTCTCTCTTTCTGAAGGGAAACAGGTGCATGCTCATGTATTGAAACTTGGGTTTGAATCGGATACTCATATTTGTAACAGTTTGATTCATTTTTATGCAACTTGTGGGTTTCTAGACTTGGCACACAAGGTGTTCGAGAAAATGTCCGAAAGAAGTGAGGTTTCATGGAACATCATGATTGACTCTTATGCAAGTGCTGGTGAGTATGACACTGCATTGAGAATGTTCTGTGAGATGCAGAGGATTCATGATCCTGACGGTTACACCATGCAAAGTGTGATCAGTTCCTGTGCTGGATTGGGTGCTTTGTCTTTGGGTTTGTGGGCTCATGCTTATGTCTTGAAAAGGAGTGACAAGAACATGATTGGTGATGTTTTGGTTAACACTAGCTTGGTGGATATGTATTGCAAGTGTGGCTCAGTGGGATTTGCAAAACAAGTCTTTGAAAGCATGCCTTATAGAGATGTGAATTCATGGAATTCAATGATTTTGGGGCTTGCCATGCATGGCATGGCTGAGGAGGCGTTGGACTACTATGCAAGAATGGTGAAGGTAAAGGGACTCATGCCGAATTCAATCACTTTTGTTGGTGTCTTGAGTGCATGTAATCACAGGGGCATGGTTAATGAAGGGATTATGTCTTTTGACATAATGACCAGGGAGTACAAAATTGAGCCAAGATTAGAGCATTACGGATGCCTCGTTGATCTTTTCGCTCGAGCCGGACGCATCGAAGAGGCTATGAACTTGGTTTCGGAAATGCCTATGAAACCGGATGTCGTGATCTGGAGGAGTCTGTTGGATGCTTGTTGCAAGCAACATGCAAGTCTTGAGCTAAGTGAAGAATTGGCCAAGAAAGTGTTTGAGTCAGAGGGAAGTACTACATATAGTAGTGGTGCTTATGTGCTATTGTCAAGAATCTATGCTTCAGCTAGCATGTGGAATGATGTTGGATTGCTTAGAAAACTAATGACTGATAAGGGTGTGAATAAAGAACCAGGTTGTAGTTTGGTAGAGATTGATGGTGTCACTCATGAATTTTTTGCTGGGGACACTAGTCATCCTCAAAGTGAAGATATATACAAGTTTATGAGTGAAATTGAGGAGAAGCTAGAAGCAACCGGGTATGTACCTGATTATTCAGGTGCACCTTTAGTTGATGAGGTTAATGAGGGAAAAAAGAATACTATGAGGTTGCATAGTGAGAGATTAGCTATAGCTTTTGGATTACTAAGGTCAAGACCAGGCATGCCAATAAGAGTGTTTAAGAATCTTAGAGTGTGTAATGATTGTCACAGTGTTACAAAATTACTATCAAGAATTTATAATGTAGAGATAATTGTGAGAGATCGTGCACGGTTCCATCATTTTAAAGAGGGAAACTGTTCTTGTAAGGATTATTGGTGA 1848 0.4123 MATTQTPLLFSTNNNGQPFIHNSHTRLFHLLNHSIVDISHLKQIHAQLLRTIHTNHHPQSLLLHSRILHHSSLLDLGYATRIFHHFQNPNSFMWNTLIRAYARTADQKHKSMELYKAMLMMEREQQSAAVIPDNYTYPFVLKACAYLFSLSEGKQVHAHVLKLGFESDTHICNSLIHFYATCGFLDLAHKVFEKMSERSEVSWNIMIDSYASAGEYDTALRMFCEMQRIHDPDGYTMQSVISSCAGLGALSLGLWAHAYVLKRSDKNMIGDVLVNTSLVDMYCKCGSVGFAKQVFESMPYRDVNSWNSMILGLAMHGMAEEALDYYARMVKVKGLMPNSITFVGVLSACNHRGMVNEGIMSFDIMTREYKIEPRLEHYGCLVDLFARAGRIEEAMNLVSEMPMKPDVVIWRSLLDACCKQHASLELSEELAKKVFESEGSTTYSSGAYVLLSRIYASASMWNDVGLLRKLMTDKGVNKEPGCSLVEIDGVTHEFFAGDTSHPQSEDIYKFMSEIEEKLEATGYVPDYSGAPLVDEVNEGKKNTMRLHSERLAIAFGLLRSRPGMPIRVFKNLRVCNDCHSVTKLLSRIYNVEIIVRDRARFHHFKEGNCSCKDYW* 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4742 615 Pfam E motif 421 486 IPR046848 -
Amo13g4742 615 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 302 337 IPR002885 -
Amo13g4742 615 PANTHER OS01G0913400 PROTEIN-RELATED 26 556 - -
Amo13g4742 615 PANTHER BNAC04G18690D PROTEIN 26 556 - -
Amo13g4742 615 Pfam E+ motif 491 514 IPR046849 -
Amo13g4742 615 TIGRFAM PPR: pentatricopeptide repeat domain 378 401 IPR002885 -
Amo13g4742 615 TIGRFAM PPR: pentatricopeptide repeat domain 201 228 IPR002885 -
Amo13g4742 615 TIGRFAM PPR: pentatricopeptide repeat domain 305 338 IPR002885 -
Amo13g4742 615 TIGRFAM PPR: pentatricopeptide repeat domain 171 199 IPR002885 -
Amo13g4742 615 Pfam DYW family of nucleic acid deaminases 522 615 IPR032867 GO:0008270
Amo13g4742 615 Gene3D Tetratricopeptide repeat domain 25 147 IPR011990 GO:0005515
Amo13g4742 615 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 199 229 IPR002885 -
Amo13g4742 615 Gene3D Tetratricopeptide repeat domain 277 496 IPR011990 GO:0005515
Amo13g4742 615 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 168 198 IPR002885 -
Amo13g4742 615 Gene3D Tetratricopeptide repeat domain 149 251 IPR011990 GO:0005515
Amo13g4742 615 Pfam PPR repeat 172 198 IPR002885 -
Amo13g4742 615 Pfam PPR repeat 377 402 IPR002885 -
Amo13g4742 615 Pfam PPR repeat 276 301 IPR002885 -
Amo13g4742 615 Pfam PPR repeat family 199 245 IPR002885 -
Amo13g4742 615 Pfam PPR repeat family 302 349 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4742 Amo-Chr13 145342696 145344595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4742 37 615 Glycoside Hydrolase AT3G49170 34.075 7.64e-119 371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4742 - - lang:109338282 936.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g4742 13 145342696 145344595 Amo13g4742 13 145342696 145344595 ECH