Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4649 ATGCTGCTGAAACYCTTGTTCTCCAAGCAAACAAATCCTCAACTCACTCTACTCGCTTTCGTTAGATCCACAACAACYGCAATAATACCTTCCAACAATTCCCACGTGCCATTTCGCCCCAACACCGTTGACCCTATCTACCTCAAGAACCGCCAAATCAACGCTTTCATCAAATCTAGGAACCTAAACTCAGCACTCGCAGTGTTCCACAGCACTTCCCTTCGTGATGCCGTCACCTACAACTTACTCATTTCAGGGCATGCCACGTGTCATGATGGCTCACCGCCACGTGCTCTTCATCTCTACGCCGAAATGGGTTTGCTTGGAATAACGGAAACCCCAACCACGTTCACATCTGTTATATKTCTCTGTGCTAATCATGGGTTRTTCGGAGAAGGCCTTCAGGTTCATTGCAAGGTTGTCAAGTTTGGTTTCTTGTCGAACGTGTTCGTTGGTGGCGCCCTTGTTGGGTTCTATATGAATTTGGGGTTATGTGGGGCTGCACTGGAGCTGTTTGACGAATTGCCAGAGAGAAATTTAGCTCTGTGGAATGTGGTGCTGCGCGGGTTGTGTGAATTGGGTTGTGTTGATGAGTTGGTTGGGTTTTATTACTCTTGGATGTGGTTTGAAGGTGTGGAGCCGAATGGGGTCACRTTTTGTTATTTGCTTAGGGMGTGTGGTYTTGAGAGAAGGTTGCATGAAGGGATGAAGATTCAAGGAAGAATTTTGAAGATGGGTTTGGTAGAATCTAATGTCTTTGTTGCTAATGCTTTGGTGGATTTTTACTCTGCTTGTGGGTGCTGGGTTGGTGCAAGGAAGTGTTTTGAGGCTATACTAGTTGAGGATGTCATATCTTGGAACTCSTTGGTTTGTGTTTATGCAGAAAATGAGTTGGTGTTTGAAGCTTTGAAACTGTTTAGTGTTATGCAATTCTGGGGGAAGAGGCCATCTGTGCGTTCTATGGTGGGGTTTTTGAATTTYTGRAGTAGAAATAAAGATGTTGTATTGGGGAAGCAGGTTCACTGTTGTGTTTTGAAATTGGGTCTTGATGAAATYAGTGTGCATGTTCAATCTGCATTGATTGATATGTATGGAAAATGTAGTGATCTTGAGAGTTCTGTAGCTGTGTTTGAATGTCTCCCTGAGAGAACTTTGGAGTGTTGRAATTCGTTGATGACTTCCCTTTCTTACTGCGGTGCAATTGAAGATGTGGTGGAGTTGTTTTYTTTGATGATTGATGAAGGTATTAGGCCAGATGAAGTAACCTTCTCTTCAACGCTGAAGGCYTTGTCGGTCTCTGCTTCAGCTAGCTTCACYATAWCTCAGTTATTGCATTGCTTTGCATTAAAATACGGACTCGAAGGAGATGCTGCAGTGGCATGCTCCCTAATGGATGCATATTCAAGATGTGGCCATGTGGAACATTCTTGTGAGATCTTTGAGGGTCTTAGTTCTCCAAATGCTATTTGTTTCACATCTATGATCAATGGATATGCCCGAAATGGAATGGGGGAAGAAGGACTTGCAGTGCTTCAYGCTATGATTGAGAAGGGCCTAAAACCAGATAAAGTTACCTTTTTATGTGCATTAACAGGATGCAATCATAAAGGGCTAGTTGAGGAGGGCAAAATAGTTTTTGACTCCATGAAATCTCTTCATGGGATTCACCCCAATCGCCAGCARTTTTCATGCATTGTAGATCTTTTATGCCGTGCCGGGCTCCTATATGAAGCTGAAGAGTTGCTGCTACTCTCACCAGAAAAAAGAGATTGTGTTATGTGGAGCTCGTTGCTGCGAAGTTGCAGGGTCCATGGGAATGAAGAGGTTGGAACAAGAGCAGCACAGGCTTTAGTCGAGCTAGGCTCCAATAACCCTGCAGTGTTGTTGCAAGCTTCAAATTTCTATGCTGAGATTGGGAAGTCTGATGCCTCAAGYGAAATCAGAGAGGTTGCTCTAGCAAGGAAGATGATAAGGGAGATTGGACATACGGCTCATGGAGTCACAGGAACCCTGACATGTGACAACATTGCCATGCTTGATGAACTTGCAAATATGGATACAGAAGAAAATGAGATAGAGCTCTCTGACATTCCTTCATGGACAAGTGAGCGTGGTGGAAAGGTTCTTGTGAATGTTGATAGCTTTGGTGCTGCTGGAGATGGAGAATCTGATGATACTGAGGCTTTCCGAAAAGCATGGAATGTTTCTTGCTCTACACCAAATTCTGTGTTCTTAGTTCCCCAAGGACGCCGCTACCTTGTCAATGCAACAAAATTCATAGGGCCTTGTAAAGGCACTCTAATCATCCAGATTGATGGAACAATAGTAGCACCAGATGAGCCTAAGAACTGGGATTCAAAATTAGCACGCGTTTGGCTTGATTTTTCAAAATTGGAGAAAGCTGTTTTCCAAGGTGCTGGAGTTATTGATGGCTCAGGCAAAAAATGGTGGGAAGCATCTTGCAAGAAGAACAAATCTAATCCTTGCAAAGGTGCACCAACAGCATTGACCATTGATTCAAGCTCAGGTATAAAGGTGAAAGGACTAACTATACAGCATAGCCAACAGATTCATTTTACCATATCAAGGTGTAATTCTGTTAGGATTTATGGTGTCAAAGTGTCATCACCAGATGACAGCCCAAACACCGACGGAATTCATATTAGTGAATCAACTAATGTCATAATCCAAGACAGCAAAATTGGAGCAGGMGATGATTGCATATCAATTGTGAATGCCAGTTCCAATATCAAAATGAAAAGAATTTTTTGTGGACCAGGACATGGAATTAGCATTGGGAGCCTTGGGAAAGACAATTCAACTGGCATAGTGACAAAAGTGATTTTAGATACAGCAGTTATTAAGGATACTACAAATGGTGTCAGGATTAAGACTTGGCAGGGGGGTTCTGGGTATGTTCGTGGAGTACGCTTTCAGAATGTGAAGATGGAAAATGCCTCAAACCCCATTATTATTGATCAATTTTACTGTGATTCACCAACTACTTGTCAAAACCAGACATCAGCCGTGGAGATAAGCGAGATCATGTATCAGAACATTAGTGGGACAACAAGGAGTGCRAAGGCCATTCAATTTGCATGCAGTGACACAGTTCCATGCAGCAGCTTGGTTCTRAGCAATGTGGACTTGGAGAAGCAAGACGGCACTGTCGAAACTTACTGTCACTCCGCTCAAGGCTTCGGCTATGGTGTTGTGCACCCTTCTGCCGATTGCCTCAATTCCAGCGACAACACTTCGGAAGTTATTACAGAACCAATCACAGTCGAAGAGGAGGAGGATACTCATCACACTGAACTATAA 3321 0.4309 MLLKXLFSKQTNPQLTLLAFVRSTTTAIIPSNNSHVPFRPNTVDPIYLKNRQINAFIKSRNLNSALAVFHSTSLRDAVTYNLLISGHATCHDGSPPRALHLYAEMGLLGITETPTTFTSVIXLCANHGLFGEGLQVHCKVVKFGFLSNVFVGGALVGFYMNLGLCGAALELFDELPERNLALWNVVLRGLCELGCVDELVGFYYSWMWFEGVEPNGVTFCYLLRXCGXERRLHEGMKIQGRILKMGLVESNVFVANALVDFYSACGCWVGARKCFEAILVEDVISWNSLVCVYAENELVFEALKLFSVMQFWGKRPSVRSMVGFLNFXSRNKDVVLGKQVHCCVLKLGLDEISVHVQSALIDMYGKCSDLESSVAVFECLPERTLECXNSLMTSLSYCGAIEDVVELFXLMIDEGIRPDEVTFSSTLKALSVSASASFTIXQLLHCFALKYGLEGDAAVACSLMDAYSRCGHVEHSCEIFEGLSSPNAICFTSMINGYARNGMGEEGLAVLHAMIEKGLKPDKVTFLCALTGCNHKGLVEEGKIVFDSMKSLHGIHPNRQQFSCIVDLLCRAGLLYEAEELLLLSPEKRDCVMWSSLLRSCRVHGNEEVGTRAAQALVELGSNNPAVLLQASNFYAEIGKSDASSEIREVALARKMIREIGHTAHGVTGTLTCDNIAMLDELANMDTEENEIELSDIPSWTSERGGKVLVNVDSFGAAGDGESDDTEAFRKAWNVSCSTPNSVFLVPQGRRYLVNATKFIGPCKGTLIIQIDGTIVAPDEPKNWDSKLARVWLDFSKLEKAVFQGAGVIDGSGKKWWEASCKKNKSNPCKGAPTALTIDSSSGIKVKGLTIQHSQQIHFTISRCNSVRIYGVKVSSPDDSPNTDGIHISESTNVIIQDSKIGAGDDCISIVNASSNIKMKRIFCGPGHGISIGSLGKDNSTGIVTKVILDTAVIKDTTNGVRIKTWQGGSGYVRGVRFQNVKMENASNPIIIDQFYCDSPTTCQNQTSAVEISEIMYQNISGTTRSAKAIQFACSDTVPCSSLVLSNVDLEKQDGTVETYCHSAQGFGYGVVHPSADCLNSSDNTSEVITEPITVEEEEDTHHTEL* 1107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4649 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 384 418 IPR002885 -
Amo13g4649 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 487 521 IPR002885 -
Amo13g4649 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 179 214 IPR002885 -
Amo13g4649 1106 Pfam PPR repeat 462 481 IPR002885 -
Amo13g4649 1106 Pfam PPR repeat 284 310 IPR002885 -
Amo13g4649 1106 Pfam PPR repeat 116 145 IPR002885 -
Amo13g4649 1106 Pfam PPR repeat 389 416 IPR002885 -
Amo13g4649 1106 PANTHER BNAA08G20470D PROTEIN 680 1089 - -
Amo13g4649 1106 ProSitePatterns Polygalacturonase active site. 921 934 IPR000743 GO:0004650|GO:0005975
Amo13g4649 1106 PANTHER - 680 1089 - -
Amo13g4649 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 282 316 IPR002885 -
Amo13g4649 1106 Pfam PPR repeat family 486 533 IPR002885 -
Amo13g4649 1106 Gene3D Tetratricopeptide repeat domain 348 447 IPR011990 GO:0005515
Amo13g4649 1106 TIGRFAM PPR: pentatricopeptide repeat domain 489 522 IPR002885 -
Amo13g4649 1106 TIGRFAM PPR: pentatricopeptide repeat domain 284 317 IPR002885 -
Amo13g4649 1106 SMART pbh1 864 890 IPR006626 -
Amo13g4649 1106 SMART pbh1 914 934 IPR006626 -
Amo13g4649 1106 SMART pbh1 944 965 IPR006626 -
Amo13g4649 1106 SMART pbh1 973 994 IPR006626 -
Amo13g4649 1106 SMART pbh1 891 912 IPR006626 -
Amo13g4649 1106 Gene3D Tetratricopeptide repeat domain 204 347 IPR011990 GO:0005515
Amo13g4649 1106 Gene3D Tetratricopeptide repeat domain 485 699 IPR011990 GO:0005515
Amo13g4649 1106 Gene3D Tetratricopeptide repeat domain 48 203 IPR011990 GO:0005515
Amo13g4649 1106 SUPERFAMILY Pectin lyase-like 708 1080 IPR011050 -
Amo13g4649 1106 Pfam Glycosyl hydrolases family 28 742 1061 IPR000743 GO:0004650|GO:0005975
Amo13g4649 1106 Gene3D - 700 1105 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4649 Amo-Chr13 143999919 144006523 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4649 675 1106 Glycoside Hydrolase AT1G23460 70.575 0.0 632
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4649 - - pvu:PHAVU_003G061700g 1596.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g4649 13 143999919 144006523 Amo13g4649 13 143999919 144006523 ECH