Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3906 ATGGAAGAATTGTACCAGTGGAAGGAACAGCTTCTCCACTTGTGGAGCCTAGCCGAAGAGCAACTCCGTCAGGTTCCCCCAGTTCAGCTCTACGCTGCCGCCGCCGTCCTCGTTTTCACCACCCTGCTGCTCCTATCATTGCGGTTGTTGAAGCGTGCCAAGTCCAACACCATTGTATTGACTGGCCTAAGTGGCGCTGGCAAAACTGTTCTCTTCTATCAGCTTAGGGATGGCTCTATCCATGGGGGGACTGTTACGTCAATGGAACCTAATGAGGAGACTTTTGTTCTTCATTCTGAAACAACAGAGAAGCGGAAGACAAAACCCGTTCATGTTGTCGACGTCCCGGGACATTCTCGTCTTCGCCCCAAATTGGATGAATATTTGCCTCAGGCTGCTGGCATAGTTTTTGTTGTTGATGCTTTGGACTTCTTACCAAACTGCCGTTCTGCTTCAGAGTATCTATATGATATTTTGACAAAGGGAAGTGTTGTGAAGAAGAAGATTCCATTGCTTATTCTCTGCAACAAAACAGACAAGGTCACTGCTCATACGAAGGAGTTTATCAGCAGGCAGATGGAGAAGGAAATTGACAAATTACGGGCATCAAGAAGTGCAATATCGGCAGCGGACATTAAAAATGAGTTCACCCTTGGGGTGCCTGGAGAACCATTTTCTTTTACCCAATGTTACAACAAAGTTACAACTGCAGATGCTTCTGGTTTAACTGGAGAGATATCTCAGTTGGAACAATTTATCAGAGAATATGTAAAGCCATAG 780 0.4564 MEELYQWKEQLLHLWSLAEEQLRQVPPVQLYAAAAVLVFTTLLLLSLRLLKRAKSNTIVLTGLSGAGKTVLFYQLRDGSIHGGTVTSMEPNEETFVLHSETTEKRKTKPVHVVDVPGHSRLRPKLDEYLPQAAGIVFVVDALDFLPNCRSASEYLYDILTKGSVVKKKIPLLILCNKTDKVTAHTKEFISRQMEKEIDKLRASRSAISAADIKNEFTLGVPGEPFSFTQCYNKVTTADASGLTGEISQLEQFIREYVKP* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3906 259 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 55 193 IPR027417 -
Amo13g3906 259 ProSiteProfiles small GTPase Arf family profile. 49 253 - -
Amo13g3906 259 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 18 259 IPR019009 -
Amo13g3906 259 PANTHER TRANSFERRIN 18 259 - -
Amo13g3906 259 CDD SR_beta 56 256 IPR019009 -
Amo13g3906 259 Gene3D - 50 257 IPR027417 -
Amo13g3906 259 Pfam Signal recognition particle receptor beta subunit 54 234 IPR019009 -
Amo13g3906 259 TIGRFAM small_GTP: small GTP-binding protein domain 56 195 IPR005225 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3906 Amo-Chr13 130816715 130819887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3906 6 259 Miscellaneous Gene Families AT5G05670 71.765 1.32e-130 368
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3906 K12272 - gmx:100800572 407.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3906 13 130816715 130819887 Amo13g3906 13 130816715 130819887 ECH