Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3904 ATGGGAGTAGTAGTAGCATTATCACCATCACCATCACCACTTTCAGGGGGAAACCTTTTCTCCTCACTCCCCTCCACACCACCACCGACGCCCCCTCACCCTTCTTCCACCCCCCAACCACCAATCCCCATCCCCAAATATCCCCCTCCCCGCAAATCCCTCCAAAACCCTCCCAACAACCACCCCGCCCTCAAACACCACCATCGCTCCAGCTACCACAAGCCAGTCAGCCGCCCCGGCGTCATTGCCTCCGACGGCGACCGCTCCGTCGTCGTCGGCGACTCCGGCGTATCATACCTCCTCCCCGGAGCTCCCTTCGAGTTCCAATTCAGCTACTCCGAGACCCCGACGGAGAAGCCCATCGCCATCAGGGAGCCGGCGTTCCTGCCATTCGCCCCGCCCACGATGCCGCGGCCGTGGACGGGGAAGGCCCCGCTGAAGAGCAAGAAGGACAAGGAGAAGAAGGTGAGGCTGCTGGAGTCATTGAACCCGCCGCGTCCCGATACCAATGGGGTGAAGCAGTTGGAGATGGCGAAGCCATTGAAGCTTGGTAAATACTCCAGGGATGGGAAGACGAGGGAGGAGATACTCGGCGACCCCTTGAGGAAATGGGAGATAAGGATGCTTGTTAAGCCTATGGTCTCTGATAATCGCCAGGTTAATCTCGGAAGGGATGGATTAACACATAACATGTTGGAGTTGATACATTCGCATTGGAAGCGTAGCCCTGTCTGTAAAATTCGTTGTAAAGGGGTTCCAACTGTAGATATGAAAAATGTCTGTCACCACATTGAGGATAAAACAGGGGGGAAAATAATTCTTAGAGTTGGTGGTGTTGTTTATCTTTTCCGTGGAAGAAACTACAACTATAGTACACGCCCACTGTATCCAGTGATGCTCTGGAAGCCTGCTGCACCTGTTTACCCAAAACTTATACAAGCTGCTCCAGGAGGATTAACAAAATCTGAAGCTGATGAACTACGTCTGAAAGGGAAAAGTCTTTTGCCAATATGTAAATTAGCCAAAAATGGAGTCTACACTTCGCTTGTAAAGGATGTCAGAGAGGCTTTTGAAGGAAGCCCTTTGGCGAAGATTGACTGCAAGGGACTGGAGCCTAGCGACTACAAGAAATTAGGTGCCAAGCTTAAGGATTTGGTTCCTTCTGTTCTGCTGTCTTTTGATGATGAACAGATATTGATGTGGAGAGGCAAAGATTGGAAATCAATGTTCCCACAACCTCCTCCACTTTCTCGTCCTTCAGAAGCAGGCATTACAGGGAATTCGGACAGTACAGGGGAGACTGAAGATGATAATCAATCTGAACAAGGGGGCAACGTGGTGAACACAAGCCCAAAAATGTTGTCTCTGTGGAAGCGTGCAATCGAGTCGAGCAAAGCTTTGTTGCTGGATGAGTTCAATCTTGGTCCTGATGCCCTCTTGGAGAAGGTAGAAGAATTCGAAGGGGTTTCGCGGGCCATGGAGCACTCCTATCCAGCATTGATTTTATCTAATGAGAATGATGCTAAAGGTTCAATTGCAAGCTTTGAAGATGACATAGAAGACAGCTATTCCAGTCAGGATGGCTTGGCTACTGAAGACGAACGCGATGTCGACAATGATGATGATTTCCTTGAAGATGACTTGTTTGATGTTGTGGACTCATCTGCGGAACCCGGATCATTACCTATTGATTTTGTTGTCAACAAGCTGAAACCAAAACTAGAAGAATAA 1731 0.4951 MGVVVALSPSPSPLSGGNLFSSLPSTPPPTPPHPSSTPQPPIPIPKYPPPRKSLQNPPNNHPALKHHHRSSYHKPVSRPGVIASDGDRSVVVGDSGVSYLLPGAPFEFQFSYSETPTEKPIAIREPAFLPFAPPTMPRPWTGKAPLKSKKDKEKKVRLLESLNPPRPDTNGVKQLEMAKPLKLGKYSRDGKTREEILGDPLRKWEIRMLVKPMVSDNRQVNLGRDGLTHNMLELIHSHWKRSPVCKIRCKGVPTVDMKNVCHHIEDKTGGKIILRVGGVVYLFRGRNYNYSTRPLYPVMLWKPAAPVYPKLIQAAPGGLTKSEADELRLKGKSLLPICKLAKNGVYTSLVKDVREAFEGSPLAKIDCKGLEPSDYKKLGAKLKDLVPSVLLSFDDEQILMWRGKDWKSMFPQPPPLSRPSEAGITGNSDSTGETEDDNQSEQGGNVVNTSPKMLSLWKRAIESSKALLLDEFNLGPDALLEKVEEFEGVSRAMEHSYPALILSNENDAKGSIASFEDDIEDSYSSQDGLATEDERDVDNDDDFLEDDLFDVVDSSAEPGSLPIDFVVNKLKPKLEE* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3904 576 PANTHER CRS2-ASSOCIATED FACTOR 1, CHLOROPLASTIC 14 571 IPR044599 GO:0000373
Amo13g3904 576 PANTHER CRS2-ASSOCIATED FACTOR 2, CHLOROPLASTIC 14 571 - -
Amo13g3904 576 MobiDBLite consensus disorder prediction 410 448 - -
Amo13g3904 576 Pfam CRS1 / YhbY (CRM) domain 319 402 IPR001890 GO:0003723
Amo13g3904 576 Pfam CRS1 / YhbY (CRM) domain 204 284 IPR001890 GO:0003723
Amo13g3904 576 ProSiteProfiles CRM domain profile. 199 295 IPR001890 GO:0003723
Amo13g3904 576 Gene3D - 201 294 IPR035920 -
Amo13g3904 576 MobiDBLite consensus disorder prediction 1 87 - -
Amo13g3904 576 SMART CRS1_YhbY_2 201 284 IPR001890 GO:0003723
Amo13g3904 576 SMART CRS1_YhbY_2 319 402 IPR001890 GO:0003723
Amo13g3904 576 MobiDBLite consensus disorder prediction 133 153 - -
Amo13g3904 576 MobiDBLite consensus disorder prediction 24 56 - -
Amo13g3904 576 Gene3D - 319 413 IPR035920 -
Amo13g3904 576 SUPERFAMILY YhbY-like 200 293 IPR035920 -
Amo13g3904 576 ProSiteProfiles CRM domain profile. 317 413 IPR001890 GO:0003723
Amo13g3904 576 MobiDBLite consensus disorder prediction 512 541 - -
Amo13g3904 576 MobiDBLite consensus disorder prediction 421 448 - -
Amo13g3904 576 SUPERFAMILY YhbY-like 319 409 IPR035920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3904 Amo-Chr13 130808649 130812705 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3904 - - adu:107481137 917.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3904 13 130808649 130812705 Amo13g3904 13 130808649 130812705 ECH