Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3898 ATGGCTTCGGAAGTGAAGAGGCAAAGAGACCACGAAGAAGAAGAAGAAGACGAGAACGGTGCCCCTGTCTCAGATGGAATTGGAATATCATCCCTCATTCAAGGCTGGTTCTCCGAAATTAGTCCAATGTGGCCTGGAGAAGCACACTCATTGAAAGTGGAAAAAGTTTTGTTTCAAGGCAAGTCTGATTACCAGAATGTCATGGTGTTCCAGTCATCATCATATGGAAAGGTTCTTGTTTTGGATGGAGTCATACAGCTCACTGAAAGGGACGAATGTGCCTACCAAGAAATGATCACTCATCTCCCTCTTTGCTCTATTCCAAATCCTAAAAAGGTCTTGGTTATTGGTGGAGGAGATGGAGGGGTCTTGAGAGAAGTATCACGCCATTCATCAGTTGAAAAGATAGACATTTGCGAAATTGACAAGATGGTTGTTGATGTCTCCAAGCAATTCTTCCCTGATGTAGCCATAGGTTTTGATGATCCCCGTGTGTCGCTTCATATTGGGGATGGAGTTGCATTCTTGAAGGAAGCTCCAGAAGGAACTTATGATGCAGTTATAGTTGATTCATCTGACCCTATTGGTCCTGCTCAAGAGCTTTTTGAGAAGCCCTTTTTCGAGTTGGTTGCTAAGGCTCTTCGGCCAGGAGGAGTTGTAAGTACTCAGGCAGAAAGTATATGGCTTCACATGGACATAATTGAGAGCATTGTCACCAATTGTAGCCAGACTTTCAAAGGCTCTGTCAACTATGCTTGGACCACAGTTCCTACATACCCAAGCGGAATAATTGGTTTTATGCTTTGCTCAACTGAGGGACCACCTGTGGATTTCAAGCATCCAGTGAATCCCATAGATGAAAAAGAGTTTCAGAAGTCAGTAAGACCAATGAAATTTTACAACTCTGAGGTAAGCTTAAAACTCAATTATTTGGATCATTATTTTGCTAATCTAGTTCCAAATTTCGTTTATCCTTAG 978 0.4233 MASEVKRQRDHEEEEEDENGAPVSDGIGISSLIQGWFSEISPMWPGEAHSLKVEKVLFQGKSDYQNVMVFQSSSYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAIGFDDPRVSLHIGDGVAFLKEAPEGTYDAVIVDSSDPIGPAQELFEKPFFELVAKALRPGGVVSTQAESIWLHMDIIESIVTNCSQTFKGSVNYAWTTVPTYPSGIIGFMLCSTEGPPVDFKHPVNPIDEKEFQKSVRPMKFYNSEVSLKLNYLDHYFANLVPNFVYP* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3898 325 PIRSF Spermidine_synth 25 322 IPR030668 GO:0006595
Amo13g3898 325 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 34 271 IPR030374 -
Amo13g3898 325 Pfam Spermine/spermidine synthase domain 92 279 - -
Amo13g3898 325 TIGRFAM speE: spermidine synthase 36 304 IPR001045 GO:0003824
Amo13g3898 325 Pfam Spermidine synthase tetramerisation domain 35 89 IPR035246 -
Amo13g3898 325 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 113 126 IPR030373 -
Amo13g3898 325 PANTHER SPERMIDINE SYNTHASE-RELATED 14 305 - -
Amo13g3898 325 Gene3D Vaccinia Virus protein VP39 87 322 IPR029063 -
Amo13g3898 325 MobiDBLite consensus disorder prediction 1 26 - -
Amo13g3898 325 CDD AdoMet_MTases 112 220 - -
Amo13g3898 325 Hamap Polyamine aminopropyltransferase [speE]. 35 320 IPR001045 GO:0003824
Amo13g3898 325 Gene3D Spermidine synthase, tetramerisation domain 28 86 IPR037163 -
Amo13g3898 325 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 32 317 IPR029063 -
Amo13g3898 325 PANTHER SPERMIDINE/SPERMINE SYNTHASE 14 305 IPR001045 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3898 Amo-Chr13 130733197 130735958 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3898 K00797 - gmx:100776863 514.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3898 13 130733197 130735958 Amo13g3898 13 130733197 130735958 ECH